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. Author manuscript; available in PMC: 2008 Sep 6.
Published in final edited form as: J Phys Chem B. 2006 Feb 16;110(6):2782–2792. doi: 10.1021/jp055341j

Table 1.

Comparison of QM and CHARMM geometries of compounds A and B (Figure 3)

Compound A Compound B
QM CHARMM QM CHARMM
Bonds (Å)
Si-O(Si) 1.636
1.634
1.635
1.649
1.633
1.639
1.636
1.648
Si-O(H) na na 1.650
1.645
1.629
1.640
Angles (°)
Si-O-Si 162.2
179.5
138.1
129.3
142.6
140.1
129.3
138.1
O-Si-O 111.4 108.6 107.2 108.6
O(H)-Si-O na na 111.1
111.1
109.2
107.3
107.5
114.2
114.4
106.8
O(H)-Si-O(H) na na 106.9 109.4
Si-O(H)-H na na 115.3
114.8
127.7
137.8
H-Si-H 111.1 109.4 na na

na: not applicable to this compound