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. 2008 Aug 20;64(Pt 9):776–780. doi: 10.1107/S1744309108025359

Table 3. Comparative analysis of the trimertrimer interfaces of the M. jannaschii complexes in the present structure and the monoclinic form.

  Complex 1 Complex 2 Monoclinic form
Hydrogen bonds, ion pairs and hydrophobic contacts in C1C4-type interfaces
Hydrogen bonds 25 4 2
Salt bridges 0 0 0
% in networks 0 0 0
Hydrophobic 918 915 1214
No. of hydrophobic pairs 812 79 810
ASA buried, total 1014 1073 1048
ASA buried, charged 266 244 226
ASA buried, apolar 480 457 555
Hydrogen bonds, ion pairs and hydrophobic contacts in C1C5-type interfaces
Hydrogen bonds 1 1 1
Salt bridges 12§ 1§ 1§
% in networks 100 100 100
Hydrophobic 822 1216 1012
No. of apolar pairs 36 34 2
ASA, buried total 610 572 811
ASA, buried charged 247 209 414

The ASA of the C1C4-type interfaces was computed as the sum of the ASAs of all the monomers in the C complex minus the sum of the ASAs of the three C1C4-type dimers divided by three. The same procedure was used for the C1C5-type interfaces except that the C1C5-type dimers were used in the calculation.

Only in one interface.

§

In two of the interfaces.