Table 3. Comparative analysis of the trimertrimer interfaces of the M. jannaschii complexes in the present structure and the monoclinic form.
Complex 1 | Complex 2 | Monoclinic form | |
---|---|---|---|
Hydrogen bonds, ion pairs and hydrophobic contacts in C1C4-type interfaces | |||
Hydrogen bonds | 25 | 4 | 2 |
Salt bridges | 0 | 0 | 0 |
% in networks | 0 | 0 | 0 |
Hydrophobic | 918 | 915 | 1214 |
No. of hydrophobic pairs | 812 | 79 | 810 |
ASA† buried, total | 1014 | 1073 | 1048 |
ASA† buried, charged | 266 | 244 | 226 |
ASA† buried, apolar | 480 | 457 | 555 |
Hydrogen bonds, ion pairs and hydrophobic contacts in C1C5-type interfaces | |||
Hydrogen bonds | 1‡ | 1‡ | 1‡ |
Salt bridges | 12§ | 1§ | 1§ |
% in networks | 100 | 100 | 100 |
Hydrophobic | 822 | 1216 | 1012 |
No. of apolar pairs | 36 | 34 | 2 |
ASA†, buried total | 610 | 572 | 811 |
ASA†, buried charged | 247 | 209 | 414 |
The ASA of the C1C4-type interfaces was computed as the sum of the ASAs of all the monomers in the C complex minus the sum of the ASAs of the three C1C4-type dimers divided by three. The same procedure was used for the C1C5-type interfaces except that the C1C5-type dimers were used in the calculation.
Only in one interface.
In two of the interfaces.