Table 2.
TIGR TC | Tentative Annotation | GO process iD | Fold Change T32 | Fold Change S70 | ||
Cell Wall Modification | 12 h | 48 h | 12 h | 48 h | ||
TC96658 | Xyloglucan endotransglucosylase putative | Carbohydrate metabolism GO:0005975 | 2.2 | 2.9 | 5.3 | 10.7 |
TC100486 | Xyloglucan endotransglycosylase putative | Carbohydrate metabolism | 2.3 | 0.9 | 1.3 | 0.8 |
TC95073 | Polygalacturonase like protein | Carbohydrate metabolism | 2.6 | 0.6 | 4.3 | 1.3 |
TC96355 | Polygalacturonase | Carbohydrate metabolism | 1.1 | 2.3 | ND | 4.1 |
TC111920 | Polygalacturonase PG1 putative | Carbohydrate metabolism | 1.4 | 2.8 | 1.5 | 3.7 |
TC110038 | Pectinesterase putative | Cell wall modification GO:0042545 | 2.0 | 1.1 | 1.3 | 0.7 |
TC94920 | Probable pectinesterase precursor | Cell wall modification | 2.2 | 0.8 | 4.5 | ND |
TC107655 | Xyloglucanase inhibitor putative | Unknown | 1.3 | 1.3 | 4.4 | ND |
TC94309 | Xyloglucanase inhibitor putative | Unknown | 1.1 | 0.9 | 2.0 | 0.9 |
TC94310 | Xyloglucanase inhibitor putative | Unknown | 1.1 | 0.8 | 2.1 | 0.9 |
TC98964 | Caffeic acid O-methyltransferase | Lignin biosynthesis GO:0009809 | 1.3 | 0.9 | 1.5 | 2.0 |
TC107848 | Caffeic acid O-methyltransferase II | Lignin biosynthesis | 1.2 | 1.2 | 2.1 | 1.3 |
TC100394 | Caffeic acid O-methyltransferase | Lignin biosynthesis | 1.1 | ND | 2.1 | 2.8 |
TC94484 | Expansin | Cell expansion GO:0009831 | 1.5 | 1.5 | 2.0 | 3.7 |
TC109283 | Expansin | Cell expansion | 1.4 | 1.5 | 1.4 | 3.0 |
TC100685 | Pectate lyase | Unknown | 1.4 | 1.8 | 1.2 | 4.7 |
TC96079 | Pectate lyase | Unknown | 1.4 | 1.8 | 1.9 | 4.6 |
TC108882 | β-1,4-glucanase | Carbohydrate metabolism | 1.3 | 1.5 | ND | 10.6 |
TC108539 | Arabinogalactan protein-like | Cell adhesion GO:0007155 | 0.6 | 1.1 | 1.0ns | 3.8 |
TC94068 | Fasciclin-like AGP 14 | Cell adhesion | ND | 1.1 | 1.0 | 2.3 |
TC108519 | Fasciclin-like AGP 14 | Cell adhesion | 0.6 | 1.5 | ND | 6.9 |
TC104866 | Pectinesterase like protein | Cell wall modification | 0.5 | 1.3 | 0.3 | 0.5 |
Oxidative Stress-ROS Generation | ||||||
TC95154 | Peroxidase | Response to oxidative stress GO:0006979 | 6.3 | 3.9 | 16.4 | 3.0 |
TC103581 | Peroxidase | Response to oxidative stress | 5.2 | 2.5 | 9.9 | 2.6 |
TC108789 | Peroxidase 11 precursor | Response to oxidative stress | 4.2 | 3.5 | 7.6 | 2.4 |
TC97623 | Peroxidase | Response to oxidative stress | 2.6 | 3.1 | ND | 0.7 |
TC107670 | Peroxidase | Response to oxidative stress | 3.0 | 1.6 | 4.3 | 1.3 |
TC108447 | Peroxidase 2 | Response to oxidative stress | 2.9 | 0.4 | 2.3 | 0.8 |
TC95164 | Peroxidase 55 precursor | Response to oxidative stress | 2.0 | 0.9 | 3.2 | 1.9 |
TC111928 | Peroxidase precursor | Response to oxidative stress | 1.6 | 2.9 | 2.4 | 2.8 |
TC103214 | Peroxidase | Response to oxidative stress | 1.4 | 0.7 | 1.4 | 2.4 |
TC101009 | Peroxidase | Response to oxidative stress | 1.6 | 0.9 | ND | 2.8 |
TC108315 | Cationic peroxidase 2 precursor | Response to oxidative stress | 1.1 | 0.9 | 1.9 | 2.7 |
TC111871 | Peroxidase | Response to oxidative stress | 1.4 | 1.4 | 2.4 | 2.3 |
TC94676 | Peroxidase precursor | Response to oxidative stress | 1.2 | 1.2 | 2.2 | 2.5 |
TC108988 | Germin-like protein precursor | Response to oxidative stress | 2.9 | ND | 1.6 | 0.5 |
TC100563 | Germin-like protein | Response to oxidative stress | 1.6 | ND | 2.3 | 1.1 |
TC94265 | Germin-like protein | Response to oxidative stress | 0.9ns | 0.6 | 2.1 | 1.9ns |
TC107416 | Carbohydrate oxidase | Electron transport GO:0006118 | 1.2 | 1.4 | 4.3 | 1.7 |
TC103024 | Peroxidase | Response to oxidative stress | 0.4 | 0.3 | 0.4 | 0.1 |
TC100904 | Peroxidase precursor | Response to oxidative stress | 0.2 | 0.2 | 0.1 | 0.2 |
TC102226 | Peroxidase | Response to oxidative stress | 0.3 | ND | 0.1 | 0.2 |
TC104806 | Probable peroxidase | Response to oxidative stress | 0.4 | 0.3 | 1.5 | 0.4 |
TC106851 | Peroxidase 2 | Response to oxidative stress | 0.4 | 0.5 | 0.6 | 0.5 |
TC108234 | Peroxidase precursor | Response to oxidative stress | 0.2 | 0.3 | 0.2 | 0.7 |
TC96817 | Germin-like protein | Response to oxidative stress | 0.5ns | 1.4 | 0.3 | 0.8 |
TC100175 | Lipoxygenase | Jasmonic acid biosynthesis GO:0009695 | 0.4 | 0.4 | ND | 1.1 |
TC100188 | Lipoxygenase LoxN2 | Jasmonic acid biosynthesis | 0.7 | 0.5 | 0.5 | 0.9 |
TC100155 | Lipoxygenase | Jasmonic acid biosynthesis | 0.6 | 0.3 | 0.5 | 0.7 |
TC100171 | Lipoxygenase | Jasmonic acid biosynthesis | 0.6 | 0.3 | 0.5 | 0.8 |
Oxidative Stress- ROS Scavenging | ||||||
TC94929 | Quinone-oxidoreductase QR1 | Threonine catabolism GO:0006567 | 2.0 | 1.2 | 1.8 | 0.9ns |
TC110730 | Quinone-oxidoreductase QR1 | Threonine catabolism | 2.2 | 1.3 | 1.3 | 0.8 |
TC107874 | NADH-ubiquinone oxidoreductase | Electron transport | 1.1ns | 2.3 | 0.3 | 0.8 |
TC95262 | Blue copper protein precursor | Electron transport | 3.1 | 1.6 | 1.9 | 1.3ns |
TC103046 | Thioredoxin-like 4 | Electron transport | 2.1 | 1.3 | 5.3 | 1.8 |
TC96215 | Thioredoxin H2 | Electron transport | 0.6 | 2.4 | 0.4 | 0.7 |
TC104708 | Thioredoxin H2 | Electron transport | ND | 2.4 | 1.3ns | 3.0 |
TC104047 | Thioredoxin 3 | Electron transport | 0.9 | 2.3 | 0.8 | 3.8 |
BM813626 | Ascorbate peroxidase | Response to oxidative stress | 0.7 | 0.9 | 1.6 | 2.6 |
TC101862 | Alternative oxidase 3 | Alternative respiration GO:0010230 | 1.3 | 0.8 | 1.7 | 2.0 |
TC95582 | Tyrosine aminotransferase | Vitamin E biosynthesis GO:0010189 | 1.5 | 2.5 | 8.3 | ND |
TC100815 | 4-hydroxyphenylpyruvate dioxygenase | Vitamin E biosynthesis | 1.2 | 1.1 | 2.3 | 1.3 |
TC108214 | Glutathione S-transferase GST 5 | Response to oxidative stress | 2.2 | ND | 1.4 | 1.4 |
TC100556 | Glutathione-S-transferase | Response to oxidative stress | 2.2 | 1.1 | 2.3 | ND |
TC105598 | Probable glutathione S-transferase | Response to oxidative stress | 1.3 | 1.4 | 2.3 | 1.0ns |
TC95231 | Probable glutathione S-transferase | Response to oxidative stress | 1.3 | 1.0 | 2.1 | 0.8 |
TC106943 | Glutathione S-transferase GST 8 | Response to oxidative stress | 1.3 | 1.0ns | 2.1 | ND |
TC94362 | Glutathione S-transferase GST 8 | Response to oxidative stress | 1.2 | 1.2 | 2.0 | 1.0 |
TC106973 | Glutathione S-transferase | Response to oxidative stress | 1.1 | 1.3 | 3.3 | ND |
TC95247 | Glutathione S-transferase GST 14 | Response to oxidative stress | 1.0ns | 0.7 | 2.2 | 0.2 |
TC95380 | Glutathione S-transferase GST 15 | Response to oxidative stress | ND | 1.2 | 0.5 | 0.8 |
TC108817 | Glutathione S-transferase GST 11 | Response to oxidative stress | ND | 1.7 | 0.7 | 0.4 |
Pathogenesis-Related (PR) Proteins | ||||||
TC93997 | PR-protein PR-4 | Defense response GO:0006952 | 2.6 | 1.7 | 5.0 | 2.1 |
BQ138448 | PR- protein | Defense response | ND | 1.3 | 2.3 | 3.2 |
TC101688 | PR-protein 4A | Defense response | 0.6 | 1.0ns | 2.7 | 1.4 |
TC94004 | PR-protein 4A | Defense response | 0.6 | 0.9 | 2.7 | 1.6 |
TC94274 | Thaumatin-like protein PR-5b precursor | Response to pathogen GO:0042828 | 1.3 | 1.0 | 2.1 | 1.8 |
TC107543 | Thaumatin-like protein | Response to pathogen | 1.6 | 1.1 | 2.7 | 1.9 |
TC96745 | PR-protein homolog | Defense response | 1.5 | 1.2 | 1.6 | 2.4 |
TC102065 | β-1,3-glucanase (putative) | Carbohydrate metabolism | 2.4 | 0.5 | 2.3 | 3.0 |
TC96253 | β-1,3-glucanase like protein | Carbohydrate metabolism | 2.3 | 1.3 | 2.0 | 0.9 |
Isoflavonoid Biosynthesis | ||||||
TC94931 | Cytochrome P450 | Electron transport | 2.5 | 1.4 | 2.2 | 1.6ns |
TC101508 | Isoflavone 2'-hydroxylase | Electron transport | 1.6 | 1.0ns | 2.6 | 1.5 |
TC95424 | Isoflavone 3'-hydroxylase | Electron transport | 1.8 | 0.9 | 3.8 | ND |
TC96039 | Isoflavone reductase related protein | Response to oxidative stress | 1.8 | 0.9 | 3.1 | 1.2 |
TC106939 | Isoflavone synthase putative | Electron transport | 1.3 | ND | 2.2 | 1.0ns |
TC97999 | Cytochrome P450 monooxygenase | Electron transport | 1.2 | 0.9 | 2.1 | 1.4 |
Stress Response | ||||||
TC108137 | ABA-responsive protein-like | Response to desiccation GO:0009269 | 1.7 | 1.4 | 2.7 | 1.3 |
TC108387 | Abscisic acid-responsive protein | Response to desiccation | 1.8 | 1.2 | 2.5 | 2.0 |
TC106508 | Abscisic stress ripening protein homolog | Response to desiccation | 1.3 | 1.3 | 2.6 | 2.7 |
BG454018 | Late embryogenesis abundant protein | Response to desiccation | 5.5 | 0.8ns | 12.9 | 1.2 |
TC94387 | Late embryogenesis abundant protein 2 | Response to desiccation | 1.5 | 1.1 | 4.2 | 0.9 |
TC94389 | Late embryogenesis abundant protein 2 | Response to desiccation | 1.8 | 1.2 | 5.1 | 0.9 |
TC94508 | Seed maturation protein LEA 4 | Response to desiccation | 1.9 | 1.0 | 4.6 | 0.9 |
TC101519 | Patatin-like protein 1 | Lipid metabolism GO:0006629 | 3.6 | 0.7 | 6.6 | 0.5 |
TC101298 | Glucosyl transferase | Metabolism GO:0008152 | 0.5 | 0.6 | 2.0 | ND |
TC94863 | Glucosyltransferase putative | Metabolism | 1.6 | 0.8 | 2.3 | ND |
TC100689 | Glucosyltransferase-6 | Metabolism | 1.6 | 1.5 | 2.0 | 1.5 |
TC110504 | Glucosyltransferase-7 | Metabolism | 1.4 | 1.4 | 6.3 | ND |
TC103147 | Tumor-related protein | Unknown | 0.5 | 0.7 | 2.3 | 4.2 |
TC107043 | ER6 protein (universal stress protein) | Response to stress GO:0006950 | 0.3 | 1.2 | 0.7 | 2.8 |
TC110393 | Heavy metal domain containing protein | Metal ion transport GO:0030001 | 0.6 | 0.9 | 0.9ns | 4.0 |
TC103767 | Universal stress protein | Response to stress | 1.1ns | 0.8 | 1.4 | 3.1 |
TC95896 | Dehydration responsive element binding | Regulation of transcription GO:0006355 | 1.6 | ND | 3.5 | 0.7 |
TC110815 | AP2 domain transcription factor | Regulation of transcription | 1.1 | 1.2 | 2.4 | 0.9ns |
TC111267 | Probable WRKY transcription factor 23 | Regulation of transcription | 1.5 | 1.3 | 2.4 | 1.4 |
TC102282 | Probable WRKY transcription factor 28 | Regulation of transcription | 1.6 | 1.4 | 2.0 | 1.3ns |
TC101761 | Putative WRKY4 transcription factor | Regulation of transcription | 1.3 | 1.0ns | 3.2 | 1.2 |
TC97324 | WRKY-type DNA binding protein | Regulation of transcription | 1.8 | 1.3 | 3.5 | 0.9 |
TC103586 | ZPT2 | Regulation of transcription GO:0045449 | 2.9 | ND | 3.5 | ND |
Cell Death | ||||||
TC103771 | Ethylene up-regulated gene ER66 | Ethylene signaling pathway GO:0009873 | 2.6 | 1.2 | 3.8 | 2.3 |
TC105302 | Subtilisin-like proteinase | Proteolysis and peptidolysis GO:0006508 | 2.4 | 1.3 | 1.9 | 1.4 |
TC95356 | probable serine proteinase | Proteolysis and peptidolysis | 2.3 | 1.1ns | 1.8 | 1.3 |
TC103618 | Subtilisin-like protease | Proteolysis and peptidolysis | 2.3 | 1.2 | 1.8 | 1.2 |
TC103261 | Papain-like cysteine proteinase | Proteolysis and peptidolysis | 2.8 | 0.9 | 4.7 | ND |
TC101194 | T1N15.5 | Apoptosis GO:0006915 | 2.0 | 1.1 | 1.5 | 0.9 |
TC112103 | Subtilisin-type protease | Proteolysis and peptidolysis | 1.8 | 0.9 | 1.1ns | 2.3 |
TC107719 | Putative cell death associated protein | Unknown | 0.9 | 1.1 | 0.8 | 2.2 |
TC107153 | Cystatin | Cysteine protease inhibitor GO:0004869 | 1.8 | 1.2 | 2.4 | 1.3 |
TC94966 | Cystatin | Cysteine protease inhibitor | 0.4 | 0.9ns | 0.4 | 1.6 |
BI310700 | Cystatin | Cysteine protease inhibitor | 0.4 | 1.0 | 0.4 | 1.7 |
Senescence | ||||||
TC101276 | Rhodanese-like family protein | Aging GO:0007568 | 2.3 | 1.4 | 2.0 | ND |
TC101956 | Senescence-associated protein sen1 | Aging | 2.1 | 0.8 | 5.2 | 1.3 |
TC107982 | Probable senescence-related protein | Aging | 1.2 | ND | 3.4 | 1.5 |
TC107460 | Ntdin | Aging | 1.4 | 1.1 | 2.1 | 1.3 |
TC94722 | Putative senescence-associated protein | Aging | 0.1 | 1.8 | 0.3 | 5.6 |
TC107766 | SRG1 protein | Aging | 0.8 | 0.4 | 0.8 | 0.8 |
Unknown/Miscellaneous | ||||||
TC105342 | MATE | Unknown | 39.8 | 33.9 | 51.3 | 23.7 |
TC102211 | GAST-1 protein precursor | Response to gibberellic acid stimulus | 2.2 | 2.1 | 1.9 | 1.3 |
TC111698 | COBRA-like gene | Unknown | 16.3 | 1.7 | 18.8 | ND |
TC95697 | F-box protein | Unknown | 5.0 | 1.1ns | 1.4 | ND |
TC108263 | E3 ubiquitin ligase SCF complex | Protein catabolism GO:0006511 | 2.2 | 1.4 | 1.7 | 1.5 |
TIGR TC, The Institute for Genomic Research Tentative Consensus sequence ID version 8.0; Tentative Annotation, based on TIGR/NCBI tBLASTx tool; GO = Gene Ontology; Fold Change = ratio of transcript abundance in Al treatment/transcript abundance in control (-Al) treatment; ns = not significant; ND = not detected.