Table 1. Highly reported genes with bounded fold changes in each stage of comparison.
Pre | TvN | Meta | |||||||||
gene | fq | chr | fold | gene | fq | chr | fold | gene | fq | chr | fold |
NR2F2 | 3 | 15q26 | 0.14 | KRT4 | 18 | 12q12 | −0.73 | TNC | 6 | 9q33 | 0.03 |
EMP1 | 3 | 12p12.3 | 0.14 | KRT5 | 16 | 12q12 | −0.72 | PI3 | 5 | 20q12 | −1 |
TAP1 | 3 | 6p21.3 | 0.16 | PLAU | 15 | 10q24 | 0.48 | SFRP4 | 4 | 7p14.1 | 0.19 |
COL6A3 | 3 | 2q37 | 0.14 | FN1 | 14 | 2q34 | 0.45 | PLEC1 | 4 | 8q24 | 0.51 |
GPRC5A | 3 | 12p13 | −0.46 | MAL | 14 | 2cen-q13 | −0.96 | MMP1 | 4 | 11q22.3 | 0.6 |
KRT1 | 2 | 12q12 | −0.35 | MMP1 | 13 | 11q22.3 | 1 | TRIM22 | 4 | 11p15 | −0.46 |
DPYSL3 | 2 | 5q32 | −0.42 | COL1A2 | 13 | 7q22.1 | 0.4 | SERPINB2 | 4 | 18q21.3 | −0.32 |
CRIP1 | 2 | 14q32.3 | −0.41 | SPARC | 13 | 5q31.3 | 0.43 | FN1 | 4 | 2q34 | 0.44 |
CXCL10 | 2 | 4q21 | 0.67 | POSTN | 12 | 13q13.3 | 0.61 | POSTN | 4 | 13q13.3 | 0.71 |
IGJ | 2 | 4q21 | 0.82 | IFI6 | 12 | 1p35 | 0.33 | DSG3 | 4 | 18q12.1 | −0.44 |
RBP1 | 2 | 3q23 | 0.59 | TGM3 | 12 | 20q11.2 | −0.86 | FGFBP1 | 4 | 4p16 | −0.19 |
IFI44 | 2 | 1p31.1 | 0.58 | SPP1 | 11 | 4q21-q25 | 0.79 | EGFR | 4 | 7p12 | −0.29 |
CA2 | 2 | 8q22 | 0.56 | ITGA6 | 11 | 2q31.1 | 0.26 | TGM3 | 4 | 20q11.2 | −0.89 |
ADH7 | 2 | 4q23 | −0.16 | KRT13 | 11 | 17q12-q21 | −0.53 | PLAU | 4 | 10q24 | 1 |
COL4A1 | 2 | 13q34 | 0.33 | EMP1 | 11 | 12p12.3 | −0.48 | ITGB4 | 4 | 17q25 | −0.32 |
COL6A1 | 2 | 21q22.3 | 0.22 | ECM1 | 11 | 1q21 | −0.57 | CHPT1 | 3 | 12q | −0.11 |
LOX | 2 | 5q23.2 | 0.18 | TNC | 10 | 9q33 | 0.43 | CDH3 | 3 | 16q22.1 | 0.32 |
FKBP1A | 2 | 20p13 | 0.18 | MMP10 | 9 | 11q22.3 | 0.75 | KRT16 | 3 | 17q12 | −1 |
SEC23A | 2 | 14q21.1 | −0.44 | MMP3 | 9 | 11q22.3 | 0.59 | PHC2 | 3 | 1p34.3 | 0.23 |
CTNND1 | 2 | 11q11 | −0.03 | MMP12 | 9 | 11q22.3 | 0.55 | RAC2 | 3 | 22q13.1 | 0 |
CLINT1 | 2 | 5q23.1 | −0.03 | LAMC2 | 9 | 1q25-q31 | 0.55 | GREM1 | 3 | 15q13 | 1 |
THY1 | 2 | 11q22.3 | 0.26 | IL8 | 9 | 4q13-q21 | 0.73 | GPC5 | 3 | 13q32 | −1 |
COL4A2 | 2 | 13q34 | 0.33 | KRT17 | 9 | 17q12 | 0.39 | KRT14 | 3 | 17q12 | 1 |
AK2 | 2 | 1p34 | 0.01 | COL5A2 | 9 | 2q14-q32 | 0.43 | MMP2 | 3 | 16q13 | 1 |
KRT10 | 2 | 17q21 | 0.13 | COL4A1 | 9 | 13q34 | 0.37 | LGALS1 | 3 | 22q13.1 | 1 |
Abbreviations: fq, the number of papers reporting a gene; chr, the chromosomal coordinate; fold, the consensus of the bounded fold changes.