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. Author manuscript; available in PMC: 2008 Sep 11.
Published in final edited form as: J Chem Theory Comput. 2008;4(5):855–868. doi: 10.1021/ct800051k

Table 1.

9-residue and 13-residue loops indicated by their the Protein Databank (PDB) designation for the protein and Rfirst and Rlast are, respectively, the first and last residue of the loop (a letter indicates the chain on which the loop is found).

PDB(RfirstR1ast) PDB(RfirstR1ast) PDB(RfirstRlast)
1aac(58–66) 1pda(108–116) 1cnv(110–122)
1aba(69–77) 1pgs(117–125) 1d0c(A:280–292)
1amp(57–65) 1php(91–99) 1dpg(A:352–364)
1arb(90–98) 1ptf(10–18) 1dys(A:290–302)
1arb(168–176) 1ra9(142–150) 1ed8(A:67–79)
1arp(127–135) 1rhs(216–224) 1eok(A:147–159)
1aru(36–44) 1sgp(E109–E117) 1f46(A:64–76)
1bt1(102–110) 1tca(170–178) 1g8f(A:72–84)
1byb(246–254) 1tca(217–225) 1gpi(A:308–320)
1cse(E95–E103) 1xif(59–67) 1h4a(X:19–31)
1csh(252–260) 1xnb(116–124) 1hnj(A:191–203)
1ede(257–265) 1xyz(A568–A576) 1hxh(A:87–99)
1fus(31–39) 1xyz(A795–A803) 1iir(A:197–209)
1fus(91–99) 1xnb(133–141) 1jp4(A:153–165)
1gpr(63–71) 1wer(942–950) 1kb1(A:793–805)
1isu(A30–A38) 2alp(139–159) 1krh(A:131–143)
1ivd(244–252) 2ayh(169–177) 1l8a(A:691–703)
1lkk(A142–A150) 2cpl(24–32) 1lki(62–74)
1lkk(A193–A201) 2eng(172–180) 1m3s(A:68–80)
1mla(194–202) 2hbg(18–26) 1mo9(A:107–119)
1mrj (92–100) 2sil(183–191) 1nln(A:26–38)
1mrk(53–61) 3pte(78–86) 1o6l(A:386–398)
1mrp(284–292) 3pte(107–115) 1ock(A:43–55)
1nfp(12–20) 3pte(215–223) 1ojq(A:167–179)
1nif(266–274) 3tgl(56–64) 1p1m(A:327–339)
1nls(131–139) 4gcr(94–102) 1qqp(2:161–173)
1noa(9–17) 1a8d(155–167) 1qs1(A:389–401)
1noa(76–84) 1ako(203–215) 1xyz(A:645–657)
1noa(99–107) 1arb(182–194) 2hlc(A:91–103)
1npk(102–110) 1bhe(121–133) 2ptd(136–148)
1onc(70–78) 1bkp(A:51–63)