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. 2007 Oct 3;14(4):169–181. doi: 10.1093/dnares/dsm018

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© The Author 2007. Kazusa DNA Research Institute

The online version of this article has been published under an open access model. Users are entitled to use, reproduce, disseminate, or display the open access version of this article for non-commercial purposes provided that: the original authorship is properly and fully attributed; the Journal and Oxford University Press are attributed as the original place of publication with the correct citation details given; if an article is subsequently reproduced or disseminated not in its entirety but only in part or as a derivative work this must be clearly indicated. For commercial re-use, please contact journals.permissions@oxfordjournals.org

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Clustering analysis of microbiomes based on cumulative bitscore comparisons. MDS was applied to the distance matrix calculated from reciprocal pairwise BLASTP analysis among all predicted gene products. The dots represent fecal samples from adults and children (blue), unweaned infants (red), Americans (green), and samples from other natural environments (orange). Whale falls 1–3, Sargasso and soil indicate the metadata for microbial communities from the deep sea,³⁹ surface seawater,²⁶ and the surface soil of a farm,³⁹ respectively.