. 2007 Oct 3;14(4):169–181. doi: 10.1093/dnares/dsm018

Table 1.

Summary of the samples, sequencing, assembly, and gene annotation

Sample status	Sample name	Sex	Age	Total reads	Total read length^a (bp)	contigs		singlets		Total lengh of assembled sequence (Mb)	Total genes^b (A)	COG-assigned genes (B)	Identified COGs^c (C)	Average COG size^d (B)/(C)	In-house NR DB hit genes^e (D)	Orphan genes^f (A) − (D)
Sample status	Sample name	Sex	Age	Total reads	Total read length^a (bp)	average length (bp)	contigs	average length (bp)	reads	Total lengh of assembled sequence (Mb)	Total genes^b (A)	COG-assigned genes (B)	Identified COGs^c (C)	Average COG size^d (B)/(C)	In-house NR DB hit genes^e (D)	Orphan genes^f (A) − (D)
Individual	In-A	Male	45 years	81687	52509363	2809.0	5410	902.0	16330	29.93	38778	18058	2355	7.67	30210	8568
Individual	In-B	Male	6 months	80617	62792581	3701.6	1721	1003.1	8481	14.88	20063	9393	1617	5.81	15127	4936
Individual	In-D	Male	35 years	84237	55137918	2159.1	7613	911.8	36312	49.55	67740	29998	2559	11.72	49079	18661
Individual	In-E	Male	3 months	80852	56781600	2301.1	4819	1008.7	16838	28.07	37652	18688	2107	8.87	28513	9139
Individual	In-M	Female	4 months	89340	57808421	3375.1	4794	655.7	15541	26.37	34330	18187	2857	6.37	27050	7280
Individual	In-R	Female	24 years	85787	55404826	1920.6	8935	811.3	36524	46.79	63356	28612	2655	10.78	46104	17252
Family I	F1-S	Male	30 years	78452	53568019	2153.6	7545	806.5	28038	38.86	54151	25173	2531	9.95	40771	13380
	F1-T	Female	28 years	81348	55365235	1980.4	7389	791.5	37458	44.28	65156	31230	2921	10.69	47955	17201
	F1-U	Female	7 months	82525	53864663	2779.4	4854	850.4	14430	25.76	35260	20365	2519	8.08	28711	6549
Family II	F2-V	Male	37 years	80772	55926002	2008.7	7919	809.2	38442	47.02	66461	33535	2873	11.67	49955	16506
	F2-W	Female	36 years	79163	54885684	2289.8	6778	833.0	30550	40.97	57213	27680	2609	10.61	43625	13588
	F2-X	Male	3 years	80858	56587120	2296.0	5032	832.1	34252	40.05	57446	26599	2669	9.97	42452	14994
	F2-Y	Female	1.5 years	79754	56276047	2044.2	9159	849.9	32461	46.31	64942	30870	2664	11.59	50349	14593
Total				1065392	726907479	2299.8	81968	839.9	345657	478.84	662548	318388	3268	97.43	499901	162647
American	Sub. 7	Female	28 years							15.94	22329	12223	2160	5.66	18443	3886
American	Sub. 8	Male	37 years							20.49	27579	14962	2249	6.65	23518	4061
Soil										144.90	212128	84060	4423	19.01	125302	86826
Whale fall	1									29.78	46478	23222	3140	7.40	32847	13631
	2									30.86	47274	21826	2922	7.47	32038	15236
	3									28.87	42870	21076	2894	7.28	31410	11460
Sargasso										816.55	1406274	746941	5184	144.09	1038259	368015

^aThe total read length with Phred scores of >15.

^bThe number of genes predicted from the non-redundant sequences of each sample by the MetaGene program.

^cThe number of COGs to which at least one gene was assigned in each microbime.

^dThe average numbers of predicted genes belonging to each COG [(B)/(C)].

^eThe number of predicted genes showing similarity to genes in the ‘in-house extended NR database’.

^fThe number of genes showing no significant similarity to genes in the ‘in-house extended NR database’ (e-value ≥ 1.0e − 5 in the BLASTP analysis).