Table 3.
Summary of sequence variation in cp- and mt-DNA regions of the genus Cedrus
| Region | Ingroups length (bp) | Alignment length (bp) | Substitution sites (informative) |
Indels in ingroups (informative) | |
|---|---|---|---|---|---|
| Ingroups + outgroups | Ingroups | ||||
| psbB-psbH | 404–409 | 415 | 24 (4) | 0 (0) | 1 (0) |
| rpL16 | 799 | 824 | 82 (30) | 1 (0) | 0 (0) |
| 5′rpS12-rpL20 | 705 | 706 | 52 (16) | 1 (0) | 0 (0) |
| trnC-trnD | 2253–2259 | 2513 | 368 (90) | 13 (2) | 3 (1) |
| trnT-trnF | 1336 | 1417 | 171 (58) | 3 (0) | 0 (0) |
| cp regions combined | 5497–5508 | 5875 | 697 (198) | 18 (2) | 4 (1) |
| nad1 intron 2 | 530–852 | 622* | 54 (8) | 8 (0) | 2 (2) |
| nad5 intron 1 | 1252 | 1266 | 59 (28) | 10 (1) | 0 (0) |
| mt regions combined | 1782–2104 | 1888 | 113 (36) | 18 (1) | 2 (2) |
* Some regions that could not be aligned have been removed.