Table 3.

Characteristics of the detected QTLs explaining waterlogging related traits in the Franklin/TX9425 population.

Trait	QTL	Chr.	One LOD support interval (cM)	LOD score	R2 (%)
Leaf chlorosis 1.1	tfy1.1-1	2H	31–35	9.21	23.3
(two weeks stress, 2004)	tfy1.1-2	3H	68–71	7.59	33.4
	tfy1.1-3	1H	61–67	2.75	7.1
Leaf chlorosis 1.2	tfy1.2-1	3H	67–71	7.31	36
(four weeks stress, 2004)
Leaf chlorosis 2.1	tfy2.1-1	3H	68–73	9.28	34.1
(two weeks stress, 2005)	tfy2.1-2	7H	72–98	3.62	16
Plant biomass reduction	tfmas	4H	47–78	2.75	16.3
Plant survival	tfsur-1	2H	49–65	3.29	19
	tfsur-2	2H	15–18	2.75	13.2