. 2008 Sep;180(1):147–164. doi: 10.1534/genetics.108.089938

TABLE 5.

Genes both differentially expressed between pure dwarf and normal parental lines (P < 0.10) and with significant brain eQTL (α = 0.05)

Transcript name^a	Biological process^a	P-value of differential expression^b	D/N common environment^c	LG^a	Location (cM)^a	LR^a	Additive effect^a	PVE (%)^a
Combined
CB496981 [GO] [Q24320] DNA-directed RNA polymerases I, II, and III subunit RPABC2	RNA synthesis	0.015	0.76	28m	70.4	19.1	0.66	28.8
CA044952 [GO] [P42281] Acyl-CoA-binding protein homolog (ACBP)	Neural development	0.017	1.53	2m	72.8	20.1	−0.54	40.2
CK991017 [GO] [P00417] cytochrome c oxidase subunit 3	Metabolism and energy production	0.063	0.87	10f	8.0	19.3	−0.79	37.9
CA047976 Wu:fc15g08 protein [D. rerio]	Unknown	0.064	1.25	36f	107.6	28.6	−1.23	78.3
CB492276 [GO] [P05213] tubulin α-2 chain	Neural development	0.072	0.90	36f	105.6	20.5	−0.77	74.0
Female only
CN442540 [GO] [P00399] cytochrome c oxidase subunit 1	Metabolism and energy production	0.0074	0.81	26m	19.7	19.7	−0.81	63.8
CA044952 [GO] [P42281] Acyl-CoA-binding protein homolog (ACBP)	Neural development	0.017	1.53	2m	70.8	22.2	−0.71	65.8
CB498203 pleiotrophic factor-α-2 precursor	Unknown	0.028	0.85	12m	28.2	22.5	−0.32	50.9
CB511393 unknown^d	Unknown	0.049	0.85	3f, 26m	18.0,169.0	22.8, 23.4	−0.95, −0.94	78.2, 77.4
CB496460 [NR] [AAO32675] hyperosmotic glycine-rich protein [S. salar]	Unknown	0.059	0.80	26m	20.0	22.7	−1.12	69.9
CA047976 Wu:fc15g08 protein [D. rerio]	Unknown	0.064	1.25	36f	107.6	22.2	−1.23	78.5
CB492276 [GO] [P05213] tubulin α-2 chain (α-tubulin 2) (α-tubulin isotype M-α-2)	Neural development	0.072	0.90	36f	107.6	23.1	−0.80	77.7
CB497444 [GO] [P68134] Actin, α cardiac	Neural development	0.078	1.30	12f	90.2	22.6	1.01	58.7
CB511927 [GO] [P68369] tubulin α-chain	Neural development	0.094	0.96	36f	107.6	25.7	−0.71	80.8
CB492855 [GO] [P62242] 40S ribosomal protein S8	Protein synthesis	0.097	1.25	5f	93.9	19.4	0.65	58.8
Male only
CK990568 [GO] [P56565] protein S100-A1	Neural plasticity	0.030	1.29	11f	70.4	22.3	−0.51	59.5
CA047133 [GO] [P02089] hemoglobin subunit β-1	Blood	0.063	0.85	21f	29.5	20.9	1.01	70.2
CB494514 [GO] [Q9VNE9] 60S ribosomal protein L13A	Protein synthesis	0.076	1.25	2m	8.0	21.2	−0.80	62.8
CK990921 unknown	Unknown	0.083	1.23	17f	83.5	19.3	−0.87	61.7

See Table 3 legend.

Based on F-test implemented in R/MAANOVA and eight individuals of each pure parental line.

Ratio of dwarf to normal mean expression values.

Only transcript for which more than one eQTL was detected; parameter estimates for each of these eQTL are separated by a comma.