Table 1.
Top 100 genes identified in Duroc.
| ID | Name | gene_id | FoldChange | adj.P.Val |
| 103725 | Cytochrome P450 2C49 (CYP2C49) | NM_214420.1 | 1.227 | 8.26e-24 |
| 104194 | Cytochrome P450 2C49 (CYP2C49) | NM_214420.1 | 0.853 | 4.98e-20 |
| 102872 | Glycine-N-acyltransferase (GLYAT) | NM_201648.1 | 1.113 | 1.27e-19 |
| 103265 | Cytochrome P450 2C49 (CYP2C49) | NM_214420.1 | 1.480 | 4.76e-18 |
| 103234 | Hepatic flavin-containing monooxygenase (FMO) (FMO1) | NM_214064.1 | 1.179 | 2.28e-17 |
| 206700 | Cytochrome P450 2C49 (CYP2C49) | NM_214420.1 | 1.099 | 2.71e-16 |
| 102682 | Serum amyloid P component (APCS) | NM_213887.1 | 1.294 | 2.71e-16 |
| 102284 | Sterile alpha motif domain containing 8 (Samd8) | NM_026283.2 | 0.969 | 3.44e-16 |
| 102668 | Hepatic flavin-containing monooxygenase (FMO) (FMO1) | NM_214064.1 | 1.271 | 8.01e-16 |
| 100748 | Regulatory factor X domain containing 2 (RFXDC2) | NM_022841.3 | 0.594 | 7.47e-14 |
| 206864 | Similar to Alcohol dehydrogenase 6 (LOC523510) | XM_601810.2 | -0.925 | 3.49e-13 |
| 102390 | Cytochrome P450 2C49 (CYP2C49) | NM_214420.1 | 1.152 | 5.05e-13 |
| 102098 | Carnitine O-octanoyltransferase (CROT) | NM_021151.2 | 0.886 | 5.30e-13 |
| 102991 | Cytochrome P450. family 2. subfamily E. polypeptide 1 (CYP2E1) | NM_214421.1 | -1.040 | 2.17e-12 |
| 216026 | 216026 | -0.728 | 3.72e-12 | |
| 102413 | Small nuclear RNA activating complex. polypeptide 1. 43 kDa (SNAPC1) | NM_003082.2 | 0.994 | 4.84e-12 |
| 103432 | 103432 | 0.527 | 2.07e-11 | |
| 210250 | Metallothionein (MT1A) | NM_001001266.1 | -0.965 | 3.09e-11 |
| 103062 | FKBP1A-like (LOC654323) | NM_001038000.1 | -1.078 | 3.09e-11 |
| 103279 | Orosomucoid 1 (ORM1) | NM_000607.1 | -0.947 | 3.99e-11 |
| 103021 | Hydroxysteroid (17-beta) dehydrogenase 13 (HSD17B13) | NM_178135.2 | -0.869 | 6.10e-11 |
| 201488 | 201488 | 0.462 | 1.08e-10 | |
| 100575 | 17beta-estradiol dehydrogenase (HSD17B4) | NM_214306.1 | 0.452 | 1.24e-10 |
| 100723 | Aspartate aminotransferase (GOT2) | NM_213928.1 | 0.493 | 3.71e-10 |
| 103194 | Alpha-1 acid glycoprotein (AGP) | XM_585370.2 | -0.932 | 4.52e-10 |
| 202082 | Family with sequence similarity 10. member A4 (FAM10A4) | NR_002183.1 | 0.424 | 6.45e-10 |
| 100724 | Phytanoyl-CoA hydroxylase (PHYH) | NM_006214.3 | 0.518 | 8.69e-10 |
| 210077 | Cytochrome P450 2C49 (CYP2C49) | NM_214420.1 | 0.872 | 9.95e-10 |
| 101277 | Estrogen sulfotransferase (STE) | NM_213992.1 | 0.557 | 1.45e-09 |
| 216031 | Insulin-like-growth factor 2 (IGF2) | NM_213883.1 | -0.687 | 1.88e-09 |
| 210204 | Similar to HLA class I histocompatibility antigen, A-11 alpha chain precursor (LOC642049) | XM_936199.1 | -0.591 | 1.88e-09 |
| 103031 | Type I iodothyronine deiodinase (DIO1) | NM_001001627.1 | 0.499 | 2.85e-09 |
| 210252 | Sarcosine dehydrogenase (SARDH) | NM_007101.2 | -0.273 | 3.55e-09 |
| 102976 | Similar to UDP-glucuronosyltransferase 2B15 precursor (UDPGT) (HLUG4) (LOC653180) | XM_931558.1 | 0.623 | 4.69e-09 |
| 201274 | Sorbitol dehydrogenase (SORD). mRNA | NM_003104.3 | 0.523 | 5.70e-09 |
| 103801 | Similar to Sorbitol dehydrogenase (L-iditol 2-dehydrogenase) (LOC650043) | XM_939131.1 | 0.452 | 1.83e-08 |
| 204461 | Glycine-N-acyltransferase (GLYAT). nuclear gene encoding mitochondrial protein | NM_005838.2 | 0.370 | 2.47e-08 |
| 102538 | 102538 | 0.746 | 2.65e-08 | |
| 204863 | Hydroxysteroid (17-beta) dehydrogenase 13 (HSD17B13) | NM_178135.2 | -0.630 | 3.89e-08 |
| 101843 | Abhydrolase domain containing 3 (ABHD3) | NM_138340.3 | 0.370 | 9.87e-08 |
| 215880 | Transcription elongation factor B (SIII). polypeptide 3 (110 kDa. elongin A) (TCEB3) | NM_003198.1 | -0.612 | 9.87e-08 |
| 200322 | Taxilin beta (TXLNB) | NM_153235.2 | 0.385 | 9.87e-08 |
| 210206 | Metallothionein (MT1A) | NM_001001266.1 | -0.536 | 1.25e-07 |
| 201503 | Carboxylesterase (CES3) | NM_214246.1 | 0.472 | 1.44e-07 |
| 202070 | 202070 | 0.485 | 1.57e-07 | |
| 102106 | 102106 | 0.335 | 1.86e-07 | |
| 206300 | Protein tyrosine phosphatase type IVA. member 1 (PTP4A1) | NM_003463.3 | 0.337 | 2.01e-07 |
| 103047 | Similar to mouse 2310016A09Rik gene (LOC134147) | NM_138809.3 | 0.456 | 2.01e-07 |
| 204653 | FKBP1A-like (LOC654323) | NM_001038000.1 | 0.256 | 2.06e-07 |
| 103327 | UDP glucuronosyltransferase 1 family, polypeptide A5 (UGT1A5) | NM_019078.1 | 0.264 | 2.42e-07 |
| 102469 | Chromosome 1 open reading frame 128 (C1orf128) | NM_020362.2 | 0.190 | 2.42e-07 |
| 201919 | FKBP1A-like (LOC654323) | NM_001038000.1 | 0.303 | 2.53e-07 |
| 103349 | Kininogen 1 (KNG1) | NM_000893.2 | 0.428 | 3.03e-07 |
| 103940 | UDP glucuronosyltransferase 1 family, polypeptide A5 (UGT1A5) | NM_019078.1 | 0.191 | 4.03e-07 |
| 204455 | Ornithine carbamoyltransferase (OTC) | NM_000531.3 | 0.357 | 4.61e-07 |
| 212598 | L1 cell adhesion molecule (L1CAM) | NM_024003.1 | -0.167 | 4.72e-07 |
| 207639 | 207639 | 0.383 | 4.83e-07 | |
| 200534 | 200534 | 0.388 | 4.89e-07 | |
| 102183 | Protein tyrosine phosphatase type IVA. member 1 (PTP4A1) | NM_003463.3 | 0.360 | 5.72e-07 |
| 206424 | Similar to transcription elongation factor B polypeptide 3 binding protein 1 isoform 1 (LOC533427) | XM_612827.2 | 0.265 | 6.41e-07 |
| 103306 | Tryptophan 2.3-dioxygenase (TDO2) | NM_005651.1 | 0.443 | 6.41e-07 |
| 104125 | Sorbitol dehydrogenase (SORD) | NM_003104.3 | 0.428 | 7.73e-07 |
| 102709 | 102709 | 0.444 | 7.76e-07 | |
| 100472 | S-adenosylhomocysteine hydrolase (AHCY) | NM_001011727.1 | 0.321 | 8.64e-07 |
| 206129 | 206129 | -0.484 | 8.86e-07 | |
| 102624 | Ornithine carbamoyltransferase (OTC) | NM_000531.3 | 0.393 | 8.86e-07 |
| 213735 | Metallothionein (MT1A) | NM_001001266.1 | 0.422 | 1.01e-06 |
| 102836 | Carboxylesterase (CES3) | NM_214246.1 | 0.563 | 1.10e-06 |
| 201162 | FKBP1A-like (LOC654323) | NM_001038000.1 | 0.268 | 1.42e-06 |
| 201961 | 201961 | 0.293 | 1.42e-06 | |
| 216074 | Metallothionein (MT1A) | NM_001001266.1 | -0.772 | 1.64e-06 |
| 207278 | 207278 | 0.282 | 1.67e-06 | |
| 101716 | 101716 | 0.328 | 1.75e-06 | |
| 204421 | Meiosis-specific nuclear structural 1 (MNS1) | NM_018365.1 | 0.364 | 1.99e-06 |
| 103156 | 103156 | 0.333 | 2.05e-06 | |
| 103376 | Hydroxysteroid (17-beta) dehydrogenase 13 (HSD17B13) | NM_178135.2 | -0.497 | 2.38e-06 |
| 100064 | Similar to UDP-galactoseN-acetylgalactosamine-alpha-R beta 1,3-galactosyltransferase (LOC645551) | XM_928571.1 | 0.159 | 2.43e-06 |
| 204950 | Abhydrolase domain containing 3 (ABHD3) | NM_138340.3 | 0.236 | 2.43e-06 |
| 204048 | Suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) (ST13) | NM_003932.3 | 0.379 | 2.74e-06 |
| 204867 | 204867 | 0.308 | 2.95e-06 | |
| 207963 | 207963 | 0.254 | 3.08e-06 | |
| 200952 | 200952 | 0.236 | 3.08e-06 | |
| 103294 | Similar to Mob4B protein (MGC124888) | NM_001033891.1 | 0.369 | 3.79e-06 |
| 208427 | RAR-related orphan receptor A (RORA) | NM_134262.1 | 0.246 | 4.25e-06 |
| 208058 | FKBP1A-like (LOC654323) | NM_001038000.1 | 0.247 | 4.48e-06 |
| 205360 | FLJ20105 protein (FLJ20105) | NM_017669.2 | 0.278 | 4.73e-06 |
| 207838 | 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria) (HMGCL) | NM_000191.2 | 0.156 | 4.78e-06 |
| 101413 | Replication protein A3. 14 kDa (RPA3) | NM_002947.3 | 0.253 | 5.25e-06 |
| 103180 | T-complex 1 (TCP1) | NM_001008897.1 | 0.310 | 5.69e-06 |
| 202298 | 202298 | 0.262 | 5.73e-06 | |
| 100384 | Alpha-methylacyl-CoA racemase (AMACR) | NM_014324.4 | 0.394 | 6.68e-06 |
| 103434 | Acyl-Coenzyme A oxidase 1, palmitoyl (ACOX1) | NM_004035.5 | 0.368 | 7.11e-06 |
| 202477 | Hypothetical LOC505518 (LOC505518) | XM_581816.2 | 0.240 | 7.42e-06 |
| 102858 | 102858 | 0.587 | 7.52e-06 | |
| 103058 | 103058 | 0.381 | 7.67e-06 | |
| 211612 | Gamma-aminobutyric acid (GABA) A receptor. alpha 3 (GABRA3) | NM_000808.2 | -0.135 | 8.97e-06 |
| 201347 | HRAS-like suppressor 3 (HRASLS3) | NM_007069.1 | 0.352 | 8.97e-06 |
| 102840 | Sorbitol dehydrogenase (SORD) | NM_003104.3 | 0.270 | 8.97e-06 |
| 201105 | COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis) (COPS2) | NM_004236.1 | 0.242 | 9.06e-06 |
| 201848 | Kinesin family member C1 (KIFC1) | NM_002263.2 | 0.274 | 9.06e-06 |
Gene expression profiles were identified in Limma using empirical Bayes moderated t-statistics. Fold change and statistical significance is shown (FDR-adjusted p-values). The clone names refer to hits to pig, human, mouse or bovine sequences. Some genes are represented by several different clones on the array and may therefore show up more than once in the table, while others have no hits to the abovementioned species.