Table 2.
Top 100 genes identified in Norwegian Landrace.
| ID | Name | gene_id | FoldChange | adj.P.Val |
| 206864 | Similar to Alcohol dehydrogenase 6 (LOC523510) | XM_601810.2 | -0.730 | 1.07e-13 |
| 204853 | 204853 | -0.441 | 2.39e-13 | |
| 209551 | Isochorismatase domain containing 1 (ISOC1) | NM_016048.1 | -0.403 | 3.28e-13 |
| 103021 | Hydroxysteroid (17-beta) dehydrogenase 13 (HSD17B13) | NM_178135.2 | -0.900 | 3.28e-13 |
| 204863 | Hydroxysteroid (17-beta) dehydrogenase 13 (HSD17B13) | NM_178135.2 | -0.730 | 3.78e-13 |
| 209525 | Zinc finger protein 471 (ZNF471) | NM_020813.1 | -0.335 | 1.69e-12 |
| 102789 | 102789 | -0.364 | 1.69e-12 | |
| 204725 | 204725 | -0.367 | 1.69e-12 | |
| 103376 | Hydroxysteroid (17-beta) dehydrogenase 13 (HSD17B13) | NM_178135.2 | -0.589 | 2.41e-12 |
| 205190 | Similar to heterogeneous nuclear ribonucleoprotein C isoform b (LOC654074) | XM_945342.1 | 0.249 | 7.01e-12 |
| 204302 | Aldehyde oxidase 1 (AOX1) | NM_001159.3 | -0.481 | 9.60e-12 |
| 204466 | 204466 | -0.345 | 1.20e-11 | |
| 203752 | 203752 | -0.274 | 1.52e-11 | |
| 206901 | Non-histone protein HMG1 (LOC445521) | NM_001004034.1 | -0.286 | 5.34e-11 |
| 218781 | KIAA1344 (KIAA1344) | NM_020784.1 | 0.280 | 5.34e-11 |
| 216031 | Insulin-like-growth factor 2 (IGF2) | NM_213883.1 | -0.847 | 5.34e-11 |
| 213651 | 213651 | -0.437 | 9.01e-11 | |
| 215880 | Transcription elongation factor B (SIII). polypeptide 3 (110 kDa. elongin A) (TCEB3) | NM_003198.1 | -0.797 | 9.45e-11 |
| 204619 | Cytochrome b-5 (CYB5) | NM_001001770.1 | -0.458 | 9.45e-11 |
| 204520 | 204520 | -0.290 | 1.45e-10 | |
| 103177 | Cytochrome b-5 (CYB5) | NM_001001770.1 | -0.489 | 2.06e-10 |
| 102774 | Non-histone protein HMG1 (LOC445521) | NM_001004034.1 | -0.302 | 3.48e-10 |
| 204081 | 204081 | -0.251 | 3.48e-10 | |
| 100528 | ATP synthase. H+ transporting. mitochondrial F0 complex. subunit F6 (ATP5J) | NM_001003703.1 | 0.250 | 3.55e-10 |
| 211561 | KIAA0427 (KIAA0427) | NM_014772.1 | 0.263 | 4.63e-10 |
| 209674 | 209674 | 0.269 | 7.12e-10 | |
| 208386 | Dual specificity phosphatase 12 (DUSP12) | NM_007240.1 | -0.318 | 7.12e-10 |
| 207228 | Small nuclear ribonucleoprotein polypeptide E (SNRPE) | NM_003094.2 | 0.252 | 7.37e-10 |
| 219297 | Purine-rich element binding protein A (PURA) | NM_005859.3 | 0.499 | 8.70e-10 |
| 218205 | SMC1 structural maintenance of chromosomes 1-like 1 (yeast) (SMC1L1) | NM_006306.2 | 0.300 | 1.11e-09 |
| 103194 | Alpha-1 acid glycoprotein (AGP) | XM_585370.2 | -1.071 | 1.16e-09 |
| 219538 | 219538 | 0.352 | 1.67e-09 | |
| 201622 | Hypothetical protein LOC285016 (LOC285016) | NM_001002919.1 | -0.417 | 1.99e-09 |
| 217117 | Amyloid beta (A4) precursor protein-binding. family B. member 3 (APBB3) | NM_006051.2 | 0.294 | 2.38e-09 |
| 102677 | 4-aminobutyrate aminotransferase (ABAT) | NM_000663.2 | 0.288 | 2.38e-09 |
| 216026 | 216026 | -0.840 | 2.51e-09 | |
| 216643 | Leupaxin (Lpxn) | NM_134152.1 | 0.271 | 2.93e-09 |
| 205721 | 205721 | -0.256 | 3.02e-09 | |
| 202919 | 202919 | 0.272 | 3.02e-09 | |
| 220257 | Similar to 60S ribosomal protein L39 (LOC651724) | XM_940942.1 | 0.273 | 3.10e-09 |
| 103136 | Mitochondrial translational initiation factor 2 (MTIF2) | NM_001005369.1 | -0.250 | 3.35e-09 |
| 201942 | 201942 | -0.286 | 4.06e-09 | |
| 216638 | 216638 | 0.304 | 4.06e-09 | |
| 204605 | Similar to Maltase-glucoamylase, intestinal (LOC642103) | XM_936233.1 | -0.234 | 4.12e-09 |
| 208567 | 208567 | -0.307 | 4.71e-09 | |
| 103361 | Phenylalanine hydroxylase (PAH) | NM_000277.1 | -0.627 | 5.15e-09 |
| 202659 | FKBP1A-like (LOC654323) | NM_001038000.1 | -0.312 | 5.49e-09 |
| 207982 | La ribonucleoprotein domain family. member 4 (LARP4) | NM_052879.3 | -0.247 | 5.63e-09 |
| 204513 | Deoxyribonuclease II (DNASE2) | NM_214196.1 | -0.255 | 5.73e-09 |
| 206370 | Syndecan binding protein (syntenin) (SDCBP) | NM_001007068.1 | -0.208 | 6.33e-09 |
| 214304 | Heat shock transcription factor 1 (HSF1) | NM_005526.1 | 0.331 | 7.28e-09 |
| 103062 | FKBP1A-like (LOC654323) | NM_001038000.1 | -1.046 | 7.37e-09 |
| 200969 | Family with sequence similarity 70. member A (FAM70A) | NM_017938.2 | 0.424 | 7.37e-09 |
| 206063 | Chromosome 14 open reading frame 43 (C14orf43) | NM_194278.2 | -0.230 | 8.05e-09 |
| 206129 | 206129 | -0.447 | 1.10e-08 | |
| 206577 | Leukemia inhibitory factor receptor (LIFR) | NM_002310.3 | -0.265 | 1.39e-08 |
| 103378 | Similar to Putative steroid dehydrogenase KIK-I (LOC508455) | XM_585231.2 | -0.314 | 1.49e-08 |
| 204838 | FKBP1A-like (LOC654323) | NM_001038000.1 | -0.309 | 1.49e-08 |
| 104413 | Pyruvate carboxylase (PC) | NM_214349.1 | 0.246 | 1.49e-08 |
| 219405 | Coiled-coil domain containing 42 (CCDC42) | NM_144681.1 | 0.447 | 1.49e-08 |
| 209512 | 209512 | -0.310 | 1.72e-09 | |
| 221025 | 221025 | 0.446 | 1.74e-08 | |
| 200362 | Chromosome 3 open reading frame 43, transcript variant 1 (C3orf43) | XM_173087.5 | -0.199 | 1.88e-08 |
| 206386 | 206386 | -0.262 | 2.65e-08 | |
| 211845 | Alanyl-tRNA synthetase domain containing 1 (AARSD1) | NM_025267.2 | 0.250 | 3.31e-08 |
| 208761 | Ring finger protein 148 (RNF148) | NM_198085.1 | -0.189 | 3.31e-08 |
| 209449 | Similar to Zinc finger CCCH-type domain containing protein 11A transcript variant 3 (LOC441155) | XM_930970.1 | -0.237 | 3.31e-08 |
| 205142 | Bone morphogenetic protein receptor, type IA (BMPR1A) | NM_004329.2 | -0.340 | 3.31e-08 |
| 203722 | 203722 | -0.217 | 3.32e-08 | |
| 103279 | Orosomucoid 1 (ORM1) | NM_000607.1 | -0.999 | 3.32e-08 |
| 101898 | Bifunctional apoptosis regulator (BFAR) | NM_016561.1 | -0.189 | 3.32e-08 |
| 104972 | Cyclin-dependent kinase inhibitor 3 (CDKN3) | NM_214320.1 | 0.364 | 3.45e-08 |
| 202997 | 202997 | -0.270 | 3.45e-08 | |
| 102991 | Cytochrome P450. family 2. subfamily E. polypeptide 1 (CYP2E1) | NM_214421.1 | -1.079 | 3.68e-08 |
| 208187 | Early growth response 3 (EGR3) | NM_004430.2 | 0.378 | 3.77e-08 |
| 205347 | Histone H3.3A (H3F3A) | NM_213930.1 | -0.237 | 3.77e-08 |
| 203762 | Zinc finger protein 7 (KOX 4. clone HF.16) (ZNF7) | NM_003416.1 | -0.234 | 4.37e-08 |
| 102955 | L-kynurenine 3-monooxygenase Fpk (KMO) | NM_214076.1 | -0.294 | 4.81e-08 |
| 212532 | TBC1 domain family. member 10B (TBC1D10B) | NM_015527.2 | 0.231 | 4.99e-08 |
| 206466 | Similar to glycosyltransferase-like domain containing 1 isoform a (LOC534677) | XM_871633.1 | -0.299 | 5.15e-08 |
| 104900 | Cullin 4A (CUL4A). transcript variant 1 | NM_001008895.1 | 0.349 | 5.59e-08 |
| 208650 | FKBP1A-like (LOC654323) | NM_001038000.1 | -0.214 | 5.83e-08 |
| 205233 | 5'-3' exoribonuclease 2 (XRN2) | NM_012255.3 | 0.217 | 5.99e-08 |
| 102672 | Cytochrome b-5 (CYB5) | NM_001001770.1 | -0.528 | 6.21e-08 |
| 101034 | Programmed cell death 6 interacting protein (PDCD6IP) | NM_013374.3 | -0.247 | 6.21e-08 |
| 206253 | Cyclin-dependent kinase 6 (CDK6) | NM_001259.5 | -0.260 | 6.21e-08 |
| 209516 | 209516 | -0.208 | 6.21e-08 | |
| 100909 | Myeloid-associated differentiation marker (MYADM) | NM_001020819.1 | -0.239 | 7.42e-08 |
| 205225 | Family with sequence similarity 80, member B (FAM80B) | NM_020734.1 | 0.247 | 7.42e-08 |
| 200683 | 200683 | -0.302 | 7.64e-08 | |
| 208724 | Dickkopf-like 1 (soggy) (DKKL1) | NM_014419.3 | 0.275 | 7.64e-08 |
| 218253 | Mesoderm induction early response 1, family member 2 (MIER2) | NM_017550.1 | 0.265 | 7.97e-08 |
| 209231 | Heparin binding protein (HBP15/L22) | NM_213987.1 | -0.343 | 8.00e-08 |
| 104000 | Ribosomal protein L39 (RPL39) | NM_001000.2 | 0.264 | 8.37e-08 |
| 205725 | 205725 | -0.208 | 8.73e-08 | |
| 102726 | Complement factor I (CFI) | NM_000204.1 | -0.380 | 8.77e-08 |
| 100609 | Proline rich 13 (PRR13) | NM_001005355.1 | 0.267 | 9.03e-08 |
| 104957 | Succinyl-CoA:alpha-ketoacid coenzyme A transferase (OXCT) | NM_213938.1 | 0.392 | 9.03e-08 |
| 216727 | 216727 | -0.287 | 9.12e-08 | |
| 200320 | Ubiquitin specific peptidase 32 (USP32) | XM_939750.1 | 0.439 | 9.28e-08 |
Gene expression profiles were identified in Limma using empirical Bayes moderated t-statistics. Fold change and statistical significance is shown (FDR-adjusted p-values). The clone names refer to hits to pig, human, mouse or bovine sequences. Some genes are represented by several different clones on the array and may therefore show up more than once in the table, while others have no hits to the abovementioned species.