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. Author manuscript; available in PMC: 2008 Sep 14.
Published in final edited form as: J Proteome Res. 2006 Mar;5(3):695–700. doi: 10.1021/pr050315j

Table 2.

Ratios of number of proteins identified in three digestion protocols relative to the standard Lys-C/Trypsin digestion protocol. The first value in each cell is the mean across four samples; the second is the standard deviation.

Percentile
Condition1 0–33 34–66 67–100
1-Hour-Column 4.46 ± 0.39 3.67 ± 0.19 2.25 ± 0.10
1-Hour-Solution 3.98 ± 0.50 3.17 ± 0.18 2.02 ± 0.06
24-Hour-Solution 2.31 ± 0.39 2.02 ± 0.12 1.64 ± 0.12
1

See text for detailed description of digestion conditions.