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. 2008 Aug 12;9(Suppl 9):S17. doi: 10.1186/1471-2105-9-S9-S17

Figure 4.

Figure 4

MA-like plots for comparing call rates of SNPs between two experiments with different batch compositions. The empty circles depict 500,568 SNPs. The x-axes represent average call rates of individual SNPs in two experiments with different batch compositions. The horizontal dotted lines indicate the expected locations of SNPs where the call rates in the two compared experiments were exactly same. A: Comparison between BC1 and BC2. The y-axis represents call rate in BC1 – call rate in BC2. B: Comparison between BC1 and BC3. The y-axis represents call rate in BC1 – call rate in BC3. C: Comparison between BC2 and BC3. The y-axis represents call rate in BC2 – call rate in BC3.