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. 2008 Aug 12;9(Suppl 9):S19. doi: 10.1186/1471-2105-9-S9-S19

Table 1.

Top-10 SCAN clusters with highest p-values

Cluster ID P -value GO Term Term Freq. in Network Term Freq. in Cluster Cluster Size
Biological Process 1 4.45E-98 nuclear mrna splicing, via spliceosome 66 58 88
89 1.01E-65 translation 252 58 64
5 1.16E-52 ubiquitin-dependent protein catabolic process 60 34 56
2 9.04E-40 transcription from rna polymerase ii promoter 50 41 288
15 8.58E-38 anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process 13 13 13
22 1.36E-30 chromatin remodeling 46 20 40
192 5.46E-29 vacuolar acidification 23 13 16
13 6.36E-29 chromosome segregation 36 16 25
24 2.14E-28 regulation of microtubule polymerization or depolymerization 10 10 12
30 9.29E-28 regulation of cell growth 10 10 13

Cellular Components 7 6.81E-53 cytosolic large ribosomal subunit 80 55 222
89 1.50E-51 mitochondrial small ribosomal subunit 33 29 64
1 2.53E-41 u4/u6 × u5 tri-snrnp complex 27 25 88
15 9.01E-36 anaphase-promoting complex 15 13 13
22 7.15E-31 rsc complex 16 15 40
24 2.14E-28 dash complex 10 10 12
38 2.14E-28 trapp complex 10 10 12
185 7.18E-26 ribonuclease mrp complex 9 9 11
155 5.84E-25 smc5-smc6 complex 8 8 8
53 4.93E-24 dna replication preinitiation complex 21 12 22

Molecular Functions 89 5.64E-71 structural constituent of ribosome 210 58 64
5 2.75E-45 endopeptidase activity 26 24 56
1 7.12E-45 contributes_to rna splicing factor activity, transesterification mechanism 29 27 88
37 6.44E-41 snap receptor activity 24 23 74
192 4.65E-28 hydrogen ion transporting atpase activity, rotational mechanism 12 11 16
185 7.18E-26 contributes_to ribonuclease mrp activity 9 9 11
22 6.60E-23 contributes_to dna-dependent atpase activity 15 12 40
34 1.30E-22 protein transporter activity 24 14 46
15 2.25E-18 ubiquitin-protein ligase activity 44 10 13
8 1.37E-17 dolichyl-diphosphooligosaccharide-protein glycotransferase activity 8 8 35