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. Author manuscript; available in PMC: 2008 Dec 13.
Published in final edited form as: J Phys Chem B. 2007 Nov 16;111(49):13797–13806. doi: 10.1021/jp075051y

Figure 2.

Figure 2

RMSD matrix of each simulation, showing the RMSD of the principal component arranged snapshots according to the first principal components (upper-left triangle) and RMSD with respect to simulation time (lower-right triangle). The dominant conformational clusters are labeled as 1 and 2.