Table 4.

Peptides which were not covered by the 10 highest scoring paths. The table displays the true peptides, and the peptides corresponding to the highest scoring paths in the spectrum graphs, along with the number of their supporting peaks in the spectrum. The “.” symbol represents a cleavage which has supporting peaks in the spectrum.

	Mascot Peptide		Top Ranked Path
#	Peptide	# Peaks	Peptide	# Peaks
1	SI.A.V.S.L.PR	17/43	V.A.T.V.S.L.PR	20/43
2	GSL.GGG.FSS.G.G.F.S.G.GS.FSR	29/38	[314.17] .G.G.F.S.S.G.W.S.G. [1136.49]	27/38
3	RID.IT.L.S.S.V.K	10/37	[198.16] A.A.L.DMV.S.V.K	9/37
4	LAPITSD.P.TE.AT.A.V.G.A.V.EASFK	20/46	[394.27] .T.S.D.Q.HHP.A.V.Q.QT.LYR	13/46
5	IR.E.E.Y.PD.R	9/26	R.L.E.E.S.NSS.R	10/26
6	FNIS.N.G.G.PA.PE.AITDK	19/48	[373.21] .S.D.G.G.QKW.H.T. [1369.66]	21/48