Table 1.
General features of the A. marina genome
Genome | pREB1 | pREB2 | pREB3 | pREB4 | pREB5 | pREB6 | pREB7 | pREB8 | pREB9 | Total | |
---|---|---|---|---|---|---|---|---|---|---|---|
Genome size | 6,503,723 | 374,161 | 356,087 | 273,121 | 226,680 | 177,162 | 172,728 | 155,110 | 120,693 | 2,133 | 8,361,598 |
G + C content | 47% | 47% | 45% | 45% | 46% | 45% | 47% | 46% | 45% | 43% | 47% |
Open reading frames | 6,342 | 392 | 417 | 384 | 279 | 224 | 192 | 174 | 120 | 4 | 8,528 |
Pseudogenes | 14 | 5 | 4 | 2 | 1 | 0 | 0 | 0 | 0 | 0 | 26 |
Coding density | 85% | 85% | 84% | 76% | 85% | 82% | 83% | 83% | 78% | 67% | 84% |
Average gene length | 867 | 814 | 713 | 541 | 693 | 647 | 744 | 737 | 785 | 286 | 824 |
Ribosomal RNAs | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 |
Transfer RNAs | 69 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 69 |
Percent CDS without similarities | 28% | 44% | 50% | 52% | 50% | 66% | 50% | 61% | 67% | 100% | 35% |
Percent conserved hypothetical | 18% | 15% | 13% | 15% | 14% | 12% | 18% | 17% | 7% | 0% | 17% |
Insertion elements | 285 | 30 | 28 | 19 | 9 | 27 | 16 | 21 | 51 | 1 | 487 |
Copy number (approximate) | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |