Table 2.
MisPred analysis of TrEMBL entries
| UniProtKB/TrEMBL | |||||||||||
| Conflict 1 | Number of proteins | Identified as containing an extracellular domain | Percentage | Identified as suspicious by MisPred | Percentage* | False positives | Percentage* | True errors | Percentage* | Annotated as fragment or chimera by UniProt | Identified as abnormal only by MisPred |
| Homo sapiens | 52237 | 6732 | 12.9% | 3907 | 58.0% | ND | ND | ND | ND | ND | ND |
| Conflict 2 | Number of proteins | Identified as containing an extra- and an intracellular domain | Percentage | Identified as suspicious by MisPred | Percentage* | False positives | Percentage* | True errors | Percentage* | Annotated as fragment or chimera by UniProt | Identified as abnormal only by MisPred |
| Homo sapiens | 52237 | 58 | 0.11% | 9 | 15.5% | 9 | 15.5% | 0 | 0.0% | 0 | 0 |
| Conflict 3 | Number of proteins | Identified as suspicious by MisPred | Percentage* | False positives | Percentage* | True errors | Percentage* | Annotated as fragment or chimera by UniProt | Identified as abnormal only by MisPred | ||
| Homo sapiens | 52237 | 0 | 0.0% | 0 | 0.0% | 0 | 0.0% | 0 | 0 | ||
| Conflict 4 | Number of proteins | Proteins containing domains suitable for the study of domain integrity | Percentage | Identified as suspicious by MisPred | Percentage* | False positives | Percentage* | True errors | Percentage* | Annotated as fragment or chimera by UniProt | Identified as abnormal only by MisPred |
| Homo sapiens | 52237 | 17073 | 32.7% | 2531 | 14.8% | ND | ND | ND | ND | ND | ND |
| Conflict 5 | Number of proteins | Identified as suspicious by MisPred | Percentage* | False positives | Percentage* | True errors | Percentage* | Annotated as fragment or chimera by UniProt | Identified as abnormal only by MisPred | ||
| Homo sapiens | 52237 | 172 | 0.33% | 0 | 0.00% | 172 | 0.33% | 85 | 87 | ||
| Mus musculus | 50304 | 40 | 0.08% | ND | ND | ND | ND | ND | ND | ||
| Rattus norvegicus | 8557 | 5 | 0.06% | ND | ND | ND | ND | ND | ND | ||
| Gallus gallus | 5549 | 6 | 0.11% | ND | ND | ND | ND | ND | ND | ||
| Danio rerio | 19623 | 387 | 1.97% | ND | ND | ND | ND | ND | ND | ||
| Caenorhabditis elegans | 30000 | 0 | 0.00% | 0 | 0 | 0 | 0 | 0 | 0 | ||
| Drosophila melanogaster | 26947 | 49 | 0.18% | ND | ND | ND | ND | ND | ND | ||
*Values for suspicious, false positive and true positive sequences are expressed as percentage of the proteins relevant for the given conflict.
ND – not determined