Table 1. Allele and genotype frequencies for cases (n=86) and controls (n=2422) and p-values for χ2 test of independence for allele or genotype counts.
SNP | Name | Allele | Cases | Controls | p value | Genotype | Cases | Controls | p value |
---|---|---|---|---|---|---|---|---|---|
1 |
rs7821500 |
T |
0.76 |
0.69 |
0.054 |
T/T |
0.56 |
0.48 |
0.072 |
G |
0.24 |
0.31 |
T/G |
0.40 |
0.42 |
||||
G/G |
0.05 |
0.10 |
|||||||
2 |
rs17466684 |
G |
0.83 |
0.82 |
0.845 |
G/G |
0.67 |
0.67 |
0.848 |
A |
0.17 |
0.18 |
G/A |
0.30 |
0.30 |
||||
A/A |
0.02 |
0.03 |
|||||||
3 |
rs2279591 |
C |
0.71 |
0.73 |
0.560 |
C/C |
0.50 |
0.53 |
0.801 |
T |
0.29 |
0.27 |
C/T |
0.42 |
0.40 |
||||
T/T |
0.08 |
0.07 |
|||||||
4 |
rs17057444 |
C |
0.96 |
0.95 |
0.755 |
C/C |
0.93 |
0.91 |
0.231 |
G |
0.04 |
0.05 |
C/G |
0.06 |
0.09 |
||||
G/G |
0.01 |
0.00 |
|||||||
5 |
rs3087554 |
T |
0.84 |
0.82 |
0.515 |
T/T |
0.73 |
0.66 |
0.044* |
C |
0.16 |
0.18 |
T/C |
0.21 |
0.31 |
||||
C/C |
0.06 |
0.02 |
|||||||
6 |
rs7812347 |
G |
0.77 |
0.72 |
0.168 |
G/G |
0.58 |
0.51 |
0.458 |
A |
0.23 |
0.28 |
G/A |
0.37 |
0.41 |
||||
A/A |
0.05 |
0.08 |
|||||||
7 |
rs11136000 |
C |
0.53 |
0.60 |
0.061 |
C/C |
0.26 |
0.35 |
0.242 |
T |
0.47 |
0.40 |
C/T |
0.55 |
0.50 |
||||
T/T |
0.20 |
0.15 |
|||||||
8 |
rs9331888 |
C |
0.74 |
0.72 |
0.445 |
C/C |
0.53 |
0.51 |
0.632 |
G |
0.26 |
0.28 |
C/G |
0.42 |
0.41 |
||||
G/G |
0.05 |
0.08 |
|||||||
9 |
rs9314349 |
A |
0.60 |
0.61 |
0.782 |
A/A |
0.34 |
0.36 |
0.808 |
G |
0.40 |
0.39 |
A/G |
0.52 |
0.50 |
||||
G/G | 0.14 | 0.14 |
The asterisk indicates that p=0.072 when the age of controls is restricted.