TABLE 5.
Identification of influenza virus segments by microarray hybridization
| Virus (expt)a | Scoreb
|
|||||||
|---|---|---|---|---|---|---|---|---|
| Segment 1 | Segment 2 | Segment 3 | Segment 4 | Segment 5 | Segment 6 | Segment 7 | Segment 8 | |
| KY98* | 1.6 (2) | 6.9 (1) | 3.8 (1) | 26.1 (5) | 13.4 (12) | 17.3 (5) | 16.4 (12) | 14.5 (9) |
| MI63* | 2.4 (4) | 5.4 (3) | 6.1 (1) | 31.7 (6) | 9.7 (9) | 12.8 (6) | 17.2 (21) | 14.8 (9) |
| Panama 99* | 2.1 (5) | 2.9 (2) | 6.0 (3) | 27.0 (7) | 9.3 (12) | 16.4 (11) | 22.9 (29) | 13.4 (13) |
| PR8* | 1.6 (2) | 6.2 (2) | 1.6 (0) | 27.0 (4) | 13.2 (10) | 7.3 (1) | 29.1 (22) | 13.9 (8) |
| HK68 (A)* | 2.7 (2) | 4.2 (2) | 4.3 (2) | 21.5 (6) | 11.6 (13) | 14.4 (4) | 27.6 (24) | 13.6 (11) |
| HK68 (B)* | 2.7 (3) | 1.9 (3) | 8.0 (2) | 25.1 (1) | 12.1 (12) | 10.0 (7) | 26.7 (22) | 13.4 (12) |
| HK68 (C)* | 3.2 (3) | 1.7 (3) | 6.0 (2) | 26.7 (1) | 10.4 (13) | 9.9 (7) | 27.2 (29) | 15.0 (14) |
| HK68 (D) | 0.8 (1) | 1.9 (0) | 7.3 (2) | 28.2 (2) | 11.5 (10) | 18.7 (6) | 15.5 (8) | 16.1 (9) |
| HK68 (E) | 3.8 (2) | 4.5 (1) | 3.9 (2) | 23.5 (7) | 10.4 (12) | 11.5 (3) | 27.4 (20) | 15.1 (11) |
| HK68 (F) | 3.2 (3) | 3.6 (3) | 2.8 (1) | 28.4 (3) | 10.4 (12) | 12.8 (4) | 29.2 (19) | 9.7 (8) |
| Available signature oligonucleotides | (7) | (4) | (5) | (122) | (25) | (22) | (41) | (20) |
a
See Table 3 for the conditions of experiments A to E. *, Experiments included in training set.
b
The scores given are from the weighted oligonucleotide calculation (see Materials and Methods). Values in parentheses are the numbers of signature oligonucleotides that registered positive.