Table 3.
SynBlast results for Danio rerio, Ensembl release 46 (Aug 2007), Zv7 assembly with the human ParaHox clusters as query.
| Reference |
DrA1 chr.24 20 M pdx1 |
DrA2 chr.5 60 M gsh1 |
DrB chr.7 50 M |
DrB1 chr.14 37 M cdx4 |
DrC1 chr.20 20 M gsh2 |
DrC2 chr.1 10 M |
DrD1? chr.14 53 M |
DrD1? chr.14 22 M |
DrD1 chr.14 25 M cdx1a |
DrD2 chr.21 43 M CDX1 |
DrD2? chr.21 36 M |
| HsA/C1 | 2.49 | 0.25 | 0.52 | 0.05 | -0.65 | - | - | - | 1.3 | - | (0.13) |
| CDX2 | 8343 | 2291 | 1605 | 1537 | 1922 | - | - | - | 1757 | - | (1112) |
| chr.13 | 2/1 | 7/2 | 5/5 | 9/6 | 40/3 | - | - | - | 3/4 | - | (8/8) |
| HsB/C2 | (-0.41) | (-0.7) | 2.53 | 0.47 | (-0.04) | -0.02 | - | - | -0.75 | -0.14 | - |
| CDX4 | (237) | (139) | 2934 | 1192 | (114) | 669 | - | - | 543 | 183 | - |
| chr.X | (19/25) | (31/38) | 1/1 | 3/2 | (7/41) | 5/7 | - | - | 34/10 | 12/32 | - |
| HsC/C3 | -1.47 | -1.56 | -0.33 | -2.52 | 3.23 | 0.91 | - | - | -0.46 | - | (-0.37) |
| GSH2 | 1478 | 507 | 1424 | 1595 | 4756 | 1880 | - | - | 469 | - | (488) |
| chr.4 | 54/4 | 55/7 | 19/5 | 56/3 | 1/1 | 3/2 | - | - | 26/9 | - | (23/8) |
| HsD/C4 | -0.6 | (-2.77) | (-3.57) | -3.44 | -3.31 | (-0.06) | 0.79 | 0.03 | -0.41 | 0.18 | 5.27 |
| CDX1 | 439 | (254) | (2238) | 953 | 940 | (991) | 1796 | 1514 | 846 | 1107 | 2550 |
| chr.5 | 13/41 | (24/57) | (42/2) | 41/12 | 37/13 | (7/11) | 2/4 | 6/5 | 11/16 | 4/9 | 1/1 |
The logRatioSum score, the gene order alignment score, and the corresponding ranks are given. Putative orthologs are depicted in bold. In combination, the two scores provide the best means to rank orthologous loci at the top. Numbers in parentheses indicate that the target region (column) is only approximately matched, and/or that only a single query gene was found. See text for more detail.