Table 1.
Comparison of the top 7 cytogenetic bands related to gender detected by different methods.
| Sub-GSE | GSEA | sigPath | |||
| set names | q-value | set names | FDR | set names | max q-value |
| chrY | 0 | chrY | 0 | chrY | 0 |
| chrYq11 | 0 | chrYq11 | 0.000801147 | chrYq11 | 0 |
| chrYp11 | 0 | chrYp11 | 0.000811309 | chrYp11 | 0 |
| chrXp22 | 0.147 | chrYp11_Xp22 | 0.25508726 | chrYp11_Xp22 | 0.315700257 |
| chrX | 0.294 | chr11p12 | 0.31999215 | chr1q22 | 0.990782566 |
| chrXp11 | 0.686 | chr6q24 | 0.6108403 | chr20p11 | 0.991916264 |
| chr15q11 | 0.924 | chr5p14 | 0.6131663 | chr15q21 | 0.991916264 |
The top 7 gene sets by Sub-GSE, GSEA and sigPath and their corresponding p-values, FDR and max q-values. The cytogenetic bands chrYp11_Xp22 was named chrYp22 in the original gene set data which include 8 genes that are on both chrYp11 and chrXp22.