TABLE 1.
Nucleotide sequences of primers and probes used in this studya
Primer or probe and target | Name | Sequence (5′ → 3′) | Function | Positions | Tm (°C) | Refer- ence |
---|---|---|---|---|---|---|
Primers | ||||||
stx1 | KS7 | CCC GGA TCC ATG AAA AAA ACA TTA TTA ATA GC | Sense | 1120-1142 | 54.0 | 30 |
KS8 | CCC GAA TCC AGC TAT TCT GAG TCA ACG | Antisense | 1401-1384 | 52.0 | 30 | |
StxA1 598 | AGT CGT ACG GGG ATG CAG ATA AAT | Sense | 598-621 | 56.9 | 2 | |
StxA1 1015 | CCG GAC ACA TAG AAG GAA ACT CAT | Antisense | 1015-992 | 55.3 | 2 | |
stx2 | LP43 | ATC CTA TTC CCG GGA GTT TAC G | Sense | 295-316 | 57.0 | 8 |
LP44 | GCG TCA TCG TAT ACA CAG GAG C | Antisense | 881-860 | 57.0 | 8 | |
StxA2 679 | TTC CGG AAT GCA AAT CAG TC | Sense | 679-698 | 52.5 | 2 | |
StxA2 942 | CGA TAC TCC GGA AGC ACA TTG | Antisense | 942-922 | 54.6 | 2 | |
Probes | ||||||
stx1 | StxA1 FL 724 | CTG TCA CAG TAA CAA ACC GTA ACA TCG CTC-X | FL probe | 724-695 | 65.5 | 2 |
StxA1 LC 693 R7 | LC-TGC CAC AGA CTG CGT CAG TGA GGT-ph | Red 705 probe | 693-670 | 67.5 | 2 | |
stx2 | StxA2 FL 769 | CAG AGC AGT TCT GCG TTT TGT CAC TGT CA-X | FL probe | 769-797 | 65.0 | 2 |
StxA2 LC 799 R6 | LC-AGC AGA AGC CTT ACG CTT CAG GC-ph | Red 640 probe | 799-821 | 63.3 | 2 |
Sequence M19473 (14) was used as a reference for nucleotide positions of stx1-specific primers and probes, and sequence X07865 (13) was used as a reference for all stx2-specific oligonucleotides. Tm, melting temperature. X, 3′ fluoresceine; LC, 5′ LightCycler dye; ph, 3′ phosphate. FL, fluoresceine Red 640, LightCycler dye Red 640; Red 705, LightCycler dye Red 705.