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. 2003 Oct;41(10):4671–4675. doi: 10.1128/JCM.41.10.4671-4675.2003

TABLE 1.

Nucleotide sequences of primers and probes used in this studya

Primer or probe and target Name Sequence (5′ → 3′) Function Positions Tm (°C) Refer- ence
Primers
    stx1 KS7 CCC GGA TCC ATG AAA AAA ACA TTA TTA ATA GC Sense 1120-1142 54.0 30
KS8 CCC GAA TCC AGC TAT TCT GAG TCA ACG Antisense 1401-1384 52.0 30
StxA1 598 AGT CGT ACG GGG ATG CAG ATA AAT Sense 598-621 56.9 2
StxA1 1015 CCG GAC ACA TAG AAG GAA ACT CAT Antisense 1015-992 55.3 2
    stx2 LP43 ATC CTA TTC CCG GGA GTT TAC G Sense 295-316 57.0 8
LP44 GCG TCA TCG TAT ACA CAG GAG C Antisense 881-860 57.0 8
StxA2 679 TTC CGG AAT GCA AAT CAG TC Sense 679-698 52.5 2
StxA2 942 CGA TAC TCC GGA AGC ACA TTG Antisense 942-922 54.6 2
Probes
    stx1 StxA1 FL 724 CTG TCA CAG TAA CAA ACC GTA ACA TCG CTC-X FL probe 724-695 65.5 2
StxA1 LC 693 R7 LC-TGC CAC AGA CTG CGT CAG TGA GGT-ph Red 705 probe 693-670 67.5 2
    stx2 StxA2 FL 769 CAG AGC AGT TCT GCG TTT TGT CAC TGT CA-X FL probe 769-797 65.0 2
StxA2 LC 799 R6 LC-AGC AGA AGC CTT ACG CTT CAG GC-ph Red 640 probe 799-821 63.3 2
a

Sequence M19473 (14) was used as a reference for nucleotide positions of stx1-specific primers and probes, and sequence X07865 (13) was used as a reference for all stx2-specific oligonucleotides. Tm, melting temperature. X, 3′ fluoresceine; LC, 5′ LightCycler dye; ph, 3′ phosphate. FL, fluoresceine Red 640, LightCycler dye Red 640; Red 705, LightCycler dye Red 705.