TABLE 4.
Isolate | Date of isolation | Phage type | PFGE clusterb | UMCU classificationc | PFGE profile | spa typed | MT | No. of RUs in locuse
|
|||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SIRU01 | SIRU05 | SIRU07 | SIRU13 | SIRU15 | SIRU21 | ||||||||
199 | 13 November 1997 | Z136 | O1 | A | 2175* | 178 | 1 | 999 | 3 | 1 | 2 | 9 | |
215 | 14 November 1997 | Z136 | O1 | A | 2175* | 178 | 1 | 999 | 3 | 1 | 2 | 9 | |
265 | 09 October 1998 | Z136 | O1 | A | 2175* | 178 | 1 | 999 | 3 | 1 | 2 | 9 | |
266 | 21 October 1998 | Z136 | O1 | A | 2175* | 178 | 1 | 999 | 3 | 1 | 2 | 9 | |
341 | 31 May 2000 | Z136 | U | F | 67 | 89 | 2 | 1 | 1 | 4 | 1 | 9 | |
593 | 01 August 2006 | 35 | U | U | 2 | 29 | 2 | 1 | 1 | 4 | 1 | 10 | |
130 | 31 May 1996 | III205 | O2 | B | 2 | 29 | 2 | 1 | 1 | 4 | 1 | 10 | |
132 | 10 June 1996 | III205 | O2 | B | 2 | 29 | 2 | 1 | 1 | 4 | 1 | 10 | |
158 | 04 January 1997 | III205 | O2 | B | 2 | 100 | 2 | 1 | 1 | 5 | 1 | 10 | |
241 | 23 June 1998 | III205 | U | E | 447 | 53 | 2 | 2 | 1 | 4 | 1 | 9 | |
478 | 01 March 2004 | 60a | U | E | 447 | 53 | 2 | 2 | 1 | 4 | 1 | 9 | |
298 | 18 June 1999 | III283 | U | C | 2 | 101 | 2 | 5 | 1 | 4 | 1 | 10 | |
319 | 25 November 1999 | III311 | U | C | 2 | 101 | 2 | 5 | 1 | 4 | 1 | 10 | |
519 | 16 December 2004 | 55 | O3 | C | 2 | 27 | 2 | 3 | 1 | 4 | 1 | 10 | |
524 | 05 January 2005 | 55 | O3 | C | 2 | 27 | 2 | 3 | 1 | 4 | 1 | 10 | |
530 | 07 January 2005 | 55 | O3 | C | 2 | 27 | 2 | 3 | 1 | 4 | 1 | 10 | |
529 | 05 January 2005 | 55 | O3 | C1 | 2173* | 102 | 2 | 3 | 2 | 4 | 1 | 10 | |
144 | 07 November 1996 | Z115 | O4 | G | 8 | 32 | 3 | 2 | 3 | 1 | 1 | 10 | |
145 | 21 February 1996 | Z115 | O4 | G | 8 | 47 | 4 | 2 | 3 | 1 | 1 | 10 | |
162 | 01 February 1997 | Z115 | O4 | G | 8 | 32 | 3 | 2 | 3 | 1 | 1 | 10 | |
255 | 15 September 1998 | Z115 | O4 | G | 8 | 32 | 3 | 2 | 3 | 1 | 1 | 10 | |
343 | 13 November 2000 | Z115 | U | G1 | 8 | 32 | 3 | 2 | 3 | 1 | 1 | 10 | |
506 | 29 June 2004 | 18 | U | H | 8 | 32 | 3 | 2 | 3 | 1 | 1 | 10 | |
516 | 06 December 2004 | 148 | O5 | D | 8 | 137 | 3 | 3 | 3 | 1 | 1 | 10 | |
518 | 11 December 2004 | 148 | O5 | D | 8 | 136 | 3 | 3 | 3 | 0 | 1 | 10 | |
520 | 11 December 2004 | 148 | O5 | D | 8 | 136 | 3 | 3 | 3 | 0 | 1 | 10 | |
347 | 27 March 2001 | Z231 | O6 | I | 52 | 412 | 4 | 25 | 2 | 1 | 1 | 10 | |
348 | 27 March 2001 | Z231 | O6 | I | 52 | 412 | 4 | 25 | 2 | 1 | 1 | 10 | |
363 | 07 April 2001 | Z231 | O6 | I | 52 | 412 | 4 | 25 | 2 | 1 | 1 | 10 | |
371 | 13 April 2001 | Z231 | O6 | I | 52 | 412 | 4 | 25 | 2 | 1 | 1 | 10 | |
395 | 06 December 2001 | Z231 | U | BB | 1257 | 169 | 4 | 2 | 2 | 1 | 1 | 10 | |
90 | 01 October 1995 | III84 | U | Z | 138 | 167 | 4 | 2 | 2 | 1 | 1 | 6 | |
125 | 15 February 1996 | III29 | U | M | 31 | 308 | 999 | 999 | 2 | 1 | 0 | 9 | |
129 | 21 May 1996 | V2 | U | U | 1 | 10 | 2 | 2 | 1 | 4 | 1 | 10 | |
284 | 10 November 1998 | III70 | U | K | 24 | 170 | 4 | 1 | 3 | 0 | 1 | 9 | |
331 | 18 February 2000 | III322 | U | Y | 2 | 27 | 2 | 3 | 1 | 4 | 1 | 10 | |
393 | 03 December 2001 | NT | U | W | 1932 | 90 | 2 | 3 | 2 | 2 | 2 | 10 | |
401 | 05 February 2002 | 147 | U | L | 44 | 275 | 4 | 999 | 1 | 3 | 6 | 14 | |
450 | 09 October 2003 | 28 | U | N | 728 | 308 | 999 | 999 | 2 | 0 | 1 | 5 | |
459 | 14 November 2003 | NT | U | P | 567 | 416 | 3 | 999 | 3 | 888 | 2 | 5 | |
466 | 04 December 2003 | 118a | U | T | 311 | 88 | 2 | 13 | 1 | 4 | 1 | 9 | |
482 | 16 June 2004 | 430/426 | U | X | 223 | 235 | 2 | 999 | 2 | 3 | 0 | 11 | |
502 | 23 October 2004 | 1293 | U | R | 1293 | 179 | 1 | 999 | 2 | 2 | 5 | 8 | |
503 | 28 October 2004 | 25a | U | S | 437 | 190 | 2 | 999 | 4 | 2 | 5 | 7 | |
559 | 13 August 2005 | 93 | U | F2 | 729 | 237 | 2 | 999 | 2 | 3 | 2 | 10 | |
561 | 26 October 2005 | 218 | U | AA | 8 | 168 | 4 | 1 | 3 | 1 | 1 | 10 | |
Z548 | 04 March 2006 | NT | U | O | 11 | 402 | 3 | 999 | 3 | 888 | 2 | 7 | |
570 | 11 March 2006 | 99a | U | Y | 37 | 401 | 4 | 2 | 2 | 999 | 1 | 7 | |
578 | 24 April 2006 | 613 | U | Q | 316 | 177 | 1 | 999 | 3 | 1 | 5 | 6 | |
602 | 25 August 2006 | 46 | U | K1 | 8 | 44 | 4 | 1 | 3 | 0 | 1 | 10 |
These classifications are compared to those previously given by the Department of Infection Control and Infection Prevention, UMCU, The Netherlands, on the basis of phage type or PFGE clustering.
NT, not typeable.
O1 to O6, outbreaks 1 to 6, respectively; U, unlinked epidemiological isolate.
Asterisks indicate two new spa types observed in this study.
999, no SIRU amplification found; 888, double fragments on SIRU PCR detected.