Table 3.

The enriched gene sets in all cell lines at the first 7 time points

	Gene set	Description	Size	ES	NES	NOM p-val	FDR q-val
1	[3205]	Self-renewal feedback genes	17	0.74	1.92	0.000	0.012
2	[3203]	Active targets of Oct, Nanog, Sox2	11	0.84	1.70	0.002	0.103
3	[1201]	Cell cycle control & DNA Damage Repair	18	0.61	1.62	0.019	0.158
4	[2305]	Cell cycle	10	0.69	1.61	0.011	0.122
5	[1303]	DNA Damage Checkpoint/p53 and ATM	23	0.55	1.60	0.009	0.110
6	[1404]	M phase	31	0.60	1.59	0.035	0.106
7	[1402]	S phase and DNA replication	14	0.88	1.57	0.000	0.108
8	[1302]	S phase	12	0.58	1.46	0.098	0.225
9	[2308]		13	0.53	1.40	0.097	0.297
10	[1406]		33	0.49	1.38	0.125	0.315