Table 3.
Calculated thermodynamics of unfolding of a B-DNA duplex in closed DNA
| fGC | [Na]/M | Tm/K | ΔH/ kcal mol−1 bp | ΔG(293) kcal mol−1 | ΔG(310) kcal mol−1 |
|---|---|---|---|---|---|
| 0.2 | 0.075 | 345.9 | 8.0 | 29.3 | 19.9 |
| 0.5 | 0.075 | 358.4 | 8.5 | 37.3 | 27.6 |
| 0.8 | 0.075 | 371 | 9.1 | 45.7 | 35.7 |
| 0.2 | 0.11 | 349 | 8 | 30.8 | 21.4 |
| 0.5 | 0.11 | 361.2 | 8.5 | 38.6 | 29 |
| 0.8 | 0.11 | 373.4 | 9.1 | 46.9 | 36.9 |
| 0.2 | 0.2 | 353.9 | 8 | 33 | 23.8 |
| 0.5 | 0.2 | 365.6 | 8.5 | 40.6 | 31.1 |
| 0.8 | 0.2 | 377.3 | 9.1 | 48.6 | 38.8 |
Loop size = 24 nt, i.e. for a 22-mer + 1 base at either end.