Table 3.
Stabilization effect of [Ni2L3]4+-M (M) and [Ni2L3]4+-P (P) on different telomeric G-quadruplex DNA in 10 mM Tris, 100 mM NaCl (or 10 mM KCl), pH 7.2 buffer
| DNA sequence | In sodium buffer |
In potassium buffer |
||||||
|---|---|---|---|---|---|---|---|---|
| Structure | DNA Tm | DNA+M ΔTm (°C) | DNA+P ΔTm (°C) | Structure | DNA Tm | DNA+M ΔTm (°C) | DNA+P ΔTm (°C) | |
| 22mer-AG3(T2AG3)3 | Human Telomeric Repeat, Antiparallel36 | 59.6 | 0 | 10.6 | Human Telomeric Repeat, Hybrid | 54.6 | 11.7 | 19.8 |
| 22mer- G4(T2G4)3 | Tetrahymena Telomeric Repeat, Hybrid37 | 62.2 | −3.1 | −1.9 | Tetrahymena Telomeric Repeat, Hybrid39 | 77.6 | −4.4 | −5.0 |
| 32mer-(T4G4)4 | Oxytricha Telomeric Repeat, Antiparallel38 | 62.8 | −5.0 | −5.0 | Oxytricha Telomeric Repeat, Antiparallel40 | 86.9 | −6.0 | −5.7 |
| 26mer AA-AG3(T2AG3)3-AA | Antiparallel | 47.5 | −0.8 | 10.2 | Hybrid42 | 61.8 | 7.0 | 18.8 |
| 26mer TT-AG3(T2AG3)3-TT | Antiparallel | 52.6 | 0 | 9.8 | Hybrid42 | 59.8 | 5.2 | 14.1 |
| 24mer T-AG3(T2AG3)3-T | Antiparallel | 54.3 | −0.2 | 9.2 | Hybrid42 | 66.6 | 5.1 | 13.2 |
Meltings of human telomeric G-quadruplex DNA with different flanking sequences on the 5′ and 3′ terminus were measured in 10 mM Tris, 100 mM NaCl (or 100 mM KCl), pH 7.2 buffer. M- or P-enantiomer was fixed at 1 µM. DNA concentration was 1 µM/strand. The bold data serves as telomeric DNA reference.