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. 2008 Oct 10;4(10):e1000212. doi: 10.1371/journal.pgen.1000212

Table 4. Comparison between MSTmap and Record for m = 300,500 and n = 100.

MSTmap MSTMap no err. detection Record
γ η E τ time E τ time E τ time
M = 300, n = 100
0.00 0.00 5.2 0.9998 12.1 6.3 0.9997 11.4 6.6 0.9997 25.7
0.00 0.01 42.7 0.9981 39.0 135.0 0.9940 29.1 135.5 0.9940 17.5
0.00 0.05 136.9 0.9939 80.1 407.9 0.9818 55.4 423.0 0.9811 23.3
0.00 0.10 338.1 0.9849 147.7 1104.5 0.9507 67.9 2946.3 0.8686 26.3
0.00 0.15 612.0 0.9727 221.0 5662.3 0.7475 78.8 8202.9 0.6342 31.9
0.01 0.00 6.1 0.9997 13.5 6.7 0.9997 11.5 107.5 0.9952 19.6
0.05 0.00 19.6 0.9991 12.8 14.4 0.9994 10.6 133.0 0.9941 25.4
0.10 0.00 34.8 0.9984 13.1 17.7 0.9992 10.0 156.8 0.9930 28.8
0.15 0.00 52.1 0.9977 11.5 30.3 0.9986 8.4 197.4 0.9912 32.3
0.01 0.01 32.6 0.9985 41.1 134.4 0.9940 31.6 153.5 0.9932 26.6
0.05 0.05 150.6 0.9933 114.1 399.1 0.9822 73.5 510.7 0.9772 34.7
0.10 0.10 402.0 0.9821 228.1 1089.9 0.9514 84.2 3626.1 0.8383 42.4
0.15 0.15 757.8 0.9662 356.7 5605.2 0.7500 95.6 10970.7 0.5108 54.5
m = 500, n = 100
0.00 0.00 8.6 0.9999 33.6 10.6 0.9998 32.4 10.4 0.9998 32.5
0.00 0.01 68.8 0.9989 105.4 219.8 0.9965 83.4 233.5 0.9963 57.0
0.00 0.05 207.4 0.9967 239.5 663.5 0.9894 171.6 1308.4 0.9790 75.3
0.00 0.10 532.1 0.9915 467.6 2226.6 0.9643 198.8 9797.2 0.8429 78.8
0.00 0.15 1014.9 0.9837 698.7 9652.8 0.8452 247.7 32850.8 0.4733 90.2
0.01 0.00 11.5 0.9998 32.4 11.9 0.9998 32.2 183.3 0.9971 60.2
0.05 0.00 30.0 0.9995 29.2 20.6 0.9997 28.7 225.6 0.9964 84.4
0.10 0.00 63.4 0.9990 27.4 34.6 0.9994 27.0 249.1 0.9960 95.8
0.15 0.00 86.2 0.9986 24.7 55.8 0.9991 24.4 312.0 0.9950 104.1
0.01 0.01 53.7 0.9991 106.5 224.8 0.9964 91.9 238.3 0.9962 81.4
0.05 0.05 238.0 0.9962 349.3 639.6 0.9897 234.5 4794.9 0.9231 99.0
0.10 0.10 629.0 0.9899 739.0 1694.7 0.9728 291.0 23968.4 0.6157 121.6
0.15 0.15 1256.5 0.9799 1256.0 8501.9 0.8637 267.0 37382.9 0.4007 162.0

The columns under “MSTMap no err. detection” contains results obtained when running MSTmap with no error detection. We report Kendall's τ statistic and the number E of erroneous marker pairs. The running time is reported in seconds.

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