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. 2008 Oct 10;4(10):e1000212. doi: 10.1371/journal.pgen.1000212

Table 5. Comparison between MSTmap and Record for m = 100,300,500 and n = 200.

MSTmap MSTMap no err. detection Record
γ η E τ time E τ time E τ time
M = 100, n = 200
0.00 0.00 3.2 0.9987 4.0 0.8 0.9997 3.9 0.5 0.9998 4.4
0.00 0.01 6.7 0.9973 8.3 19.1 0.9923 6.3 18.4 0.9926 3.8
0.00 0.05 19.1 0.9923 12.2 65.5 0.9735 7.2 55.6 0.9775 5.0
0.00 0.10 58.5 0.9764 17.1 192.3 0.9223 8.4 196.0 0.9208 6.5
0.00 0.15 112.0 0.9548 22.6 533.0 0.7847 9.1 513.9 0.7924 7.9
0.01 0.00 2.3 0.9991 4.2 0.6 0.9998 3.8 16.9 0.9932 4.0
0.05 0.00 5.3 0.9979 3.8 1.2 0.9995 3.6 19.2 0.9922 4.5
0.10 0.00 11.2 0.9955 3.4 2.0 0.9992 3.2 22.7 0.9908 5.2
0.15 0.00 11.2 0.9955 3.2 3.2 0.9987 3.0 26.1 0.9895 5.6
0.01 0.01 4.5 0.9982 8.4 19.9 0.9919 6.5 22.9 0.9908 4.9
0.05 0.05 25.2 0.9898 15.6 67.8 0.9726 7.7 91.1 0.9632 10.3
0.10 0.10 71.2 0.9712 24.8 171.8 0.9306 8.5 293.2 0.8815 13.5
0.15 0.15 138.2 0.9442 40.0 587.0 0.7628 9.3 1020.9 0.5875 13.2
m = 300, n = 200
0.00 0.00 8.2 0.9996 38.1 1.9 0.9999 34.9 2.4 0.9999 98.1
0.00 0.01 19.7 0.9991 75.8 59.1 0.9974 58.1 59.6 0.9973 35.7
0.00 0.05 64.4 0.9971 111.8 188.3 0.9916 73.5 186.6 0.9917 49.0
0.00 0.10 169.3 0.9925 187.0 525.8 0.9766 93.9 534.0 0.9762 55.2
0.00 0.15 328.2 0.9854 254.3 1350.3 0.9398 94.0 2269.8 0.8988 63.5
0.01 0.00 8.5 0.9996 35.4 1.8 0.9999 34.9 48.3 0.9978 38.3
0.05 0.00 15.9 0.9993 32.4 3.8 0.9998 31.7 54.1 0.9976 43.1
0.10 0.00 28.4 0.9987 29.6 8.9 0.9996 29.0 62.5 0.9972 49.6
0.15 0.00 38.2 0.9983 27.5 12.2 0.9995 26.8 81.0 0.9964 55.4
0.01 0.01 16.7 0.9993 75.7 63.5 0.9972 61.0 66.1 0.9971 45.6
0.05 0.05 66.9 0.9970 146.9 194.0 0.9914 84.3 227.3 0.9899 63.9
0.10 0.10 205.7 0.9908 281.3 517.4 0.9769 96.8 758.6 0.9662 82.3
0.15 0.15 418.5 0.9813 457.8 1179.5 0.9474 113.5 5464.8 0.7563 104.7
m = 500, n = 200
0.00 0.00 12.1 0.9998 99.0 2.8 1.0000 97.1 4.2 0.9999 123.9
0.00 0.01 32.3 0.9995 206.7 100.1 0.9984 162.1 100.0 0.9984 113.8
0.00 0.05 104.1 0.9983 295.5 282.5 0.9955 223.2 323.6 0.9948 149.9
0.00 0.10 291.3 0.9953 495.0 810.5 0.9870 287.8 1011.1 0.9838 158.7
0.00 0.15 542.5 0.9913 772.4 2099.5 0.9663 323.0 11335.7 0.8183 184.6
0.01 0.00 15.1 0.9998 96.9 3.3 0.9999 95.5 79.8 0.9987 120.9
0.05 0.00 28.7 0.9995 90.1 6.0 0.9999 88.4 88.6 0.9986 133.5
0.10 0.00 47.4 0.9992 83.0 10.7 0.9998 81.3 107.1 0.9983 146.5
0.15 0.00 56.5 0.9991 77.0 17.7 0.9997 75.5 123.1 0.9980 167.2
0.01 0.01 30.2 0.9995 216.0 98.4 0.9984 172.7 183.8 0.9971 143.9
0.05 0.05 112.0 0.9982 463.0 331.4 0.9947 260.9 632.2 0.9899 193.2
0.10 0.10 342.1 0.9945 852.5 940.9 0.9849 349.4 2110.1 0.9662 226.1
0.15 0.15 725.9 0.9884 1506.2 2190.2 0.9649 368.7 15200.3 0.7563 274.5

The columns under “MSTMap no err. detection” contains results obtained when running MSTmap with no error detection. We report Kendall's τ statistic and the number E of erroneous marker pairs. The running time is reported in seconds.