Table I.
Hierarchical clusters of differentially expressed proteins and distribution of the proteins involved in each category or subcategory in different clusters
The clusters (c0 to c4) were created by GeneCluster 2.0; raw data for the clusters are listed in Supplemental Table S4.
| Categories or Subcategories | c0 | c1 | c2 | c3 | c4 | Total |
|---|---|---|---|---|---|---|
| 01 Metabolism | 30 | 23 | 17 | 14 | 36 | 120 |
| 01.01 Sugar conversion | 4 | 5 | 2 | 1 | 4 | 16 |
| 01.02 Glycolysis | 11 | 3 | 1 | 1 | 5 | 21 |
| 01.03 Alcoholic fermentation | 1 | 1 | 0 | 2 | 5 | 9 |
| 01.04 Pentose phosphate | 0 | 1 | 0 | 0 | 1 | 2 |
| 01.05 TCA pathway | 0 | 0 | 3 | 0 | 0 | 3 |
| 01.06 Starch synthesis | 2 | 0 | 2 | 7 | 12 | 23 |
| 01.07 Amino acid metabolism | 4 | 4 | 3 | 2 | 1 | 14 |
| 01.08 Nitrogen and sulfur metabolism | 1 | 2 | 2 | 0 | 1 | 6 |
| 01.09 Nucleotide metabolism | 2 | 1 | 1 | 1 | 3 | 8 |
| 01.10 Lipid and sterol metabolism | 1 | 2 | 3 | 0 | 0 | 6 |
| 01.11 Secondary metabolism | 4 | 3 | 0 | 0 | 4 | 11 |
| 02 Protein synthesis and destination | 24 | 13 | 6 | 9 | 11 | 63 |
| 02.01 Protein synthesis | 4 | 4 | 5 | 0 | 0 | 13 |
| 02.02 Protein folding and modification | 11 | 2 | 1 | 7 | 10 | 31 |
| 02.03 Proteolysis | 9 | 7 | 0 | 2 | 1 | 19 |
| 03 Cell growth/division | 2 | 8 | 0 | 2 | 1 | 13 |
| 04 Signal transduction | 2 | 6 | 0 | 2 | 2 | 12 |
| 07 Transcription | 2 | 2 | 2 | 1 | 1 | 8 |
| 08 PPDK | 1 | 4 | 2 | 0 | 0 | 7 |
| 09 Defense response | 3 | 6 | 3 | 3 | 4 | 19 |
| 10 Photosynthesis | 5 | 4 | 1 | 0 | 1 | 11 |