Table 1. PCR primers and conditions.
Nest 1 | Nest 2 | |||
Pvama1 1663 bp | Pvama1_F16 | 5′ gcg gtt act tcc acc cc 3′ | Pvama1_F29 | 5′ gca aac caa atc gct gcc 3′ |
Pvama1_R613 | 5′ gcg tgg tgt ggg agg ccc 3′ | Pvama1_R598 | 5′ gcc tcg ggg tcg agc atc tcg tc 3′ | |
Nest 1 PCR: | 94°C3 min×1 cycle, (94°C1 min−46°C1 min−72°C2.5 min)×40 cycles, 72°C10 min×1 | Nest 2 PCR: | 94°C3 min×1 cycle, (94°C1 min−57°C1 min–72°C2.5 min)×40 cycles, 72°C10 min×1 | |
Fwd sequencing: | Rev sequencing | |||
Pvama1_F142 | aga att cca gct gga aga tg | Pvama1_R138 | ttc cac ttc tgc atc ttc ccc | |
Pvama1_F301 | cgt aaa aat tta gga aac gcc | Pvama1_R293 | aca ttt ttg ctc aaa tac acc | |
Pvama1_F441 | ccc ctg cag cat ata taa aga c | Pvama1_R442 | ggg gaa atc ccg gtc tac ttc | |
Pfama1 1770 bp | Pfama1_F5* | 5′ tgc gta tta tta ttg agc 3′ | Pfama1_F10* | 5′ gag cgc ctt tga gtt tac 3′ |
Pfama1_R613* | 5′ gtg ttg tat gtg atg ctc 3′ | Pfama1_R598* | 5′ gcc tca gga tct aac att tca tc 3′ | |
Nest 1 PCR: | 94°C3 min×1 cycle, (94°C1 min−46°C1 min−72°C2.5 min)×40 cycles, 72°C10 min×1 | Nest 2 PCR: | 94°C3 min×1 cycle, (94°C1 min−60°C1 min−72°C2.5 min)×40 cycles, 72°C10 min×1 | |
Fwd sequencing: | Rev sequencing: | |||
Pfama1_F143 | gac ttc cat cag gga aat gtc c | Pfama1_R188 | gag gtt ctg ttg gag gaa aag c | |
Pfama1_F312 | cgg att atg ggt cga tgg aaa ttg | Pfama1_R350 | tta ggt tga tcc gaa gca ctc aa | |
Pfama1_F485 | gac agt tta aaa tgc cca tgt gc | Pfama1_R492 | cac atg ggc att tta aac tgt c |
(Polley & Conway, 2001).