Table 3.

Performance of the IPS system on the BioCreative II data

Short description	Precision	Recall	Micro-F	Macro-F
m = 2; gl = 0.83; ld = 3; ids = 2; sr = a, h, m, y, *	1.8	43.7	3.5	3.1
m = 1; gl = 0.83; ld = 3; ids = 1; sr = a,*	25.2	23.3	24.2	21.1
m = 1; gl = 0.75; ld = 5; ids = 1; sr = a,*	22.8	21.6	22.2	19.7

Results for different strategies using the IntAct pattern collection on the BioCreative II test set. gl, guide list cut-off; ids, number of submitted IDs per protein; IPS, interaction pair subtask; ld, maximum length difference; m, minimum of identified interactions per pair and article required; sr, species resolution (pick first species from abstract [a], pick human [h], mouse [m], yeast [y], or from best scored protein [*], in the given order; see text for explanations on these parameters).