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. 2008 Sep 22;9:389. doi: 10.1186/1471-2105-9-389

Table 1.

Superfamily detection error rates at full coverage.

Classifying sequences					Classifying structures
Primary	Secondary	A_tst	B_tst	A_tst+ B_tst	Primary	Secondary	A_tst	B_tst	A_tst+ B_tst
SVM	-	0.2396	1.0000	0.5510	SVM	-	0.2194	1.0000	0.5391
PSI-BLAST	-	0.4914	0.5569	0.5182	MAMMOTH	-	0.2922	0.3309	0.3081
SVM	PSI-BLAST	0.2376	0.5598	0.4322	SVM	MAMMOTH	0.1790	0.3367	0.2794
PSI-BLAST	SVM	0.2730	0.5569	0.4078	MAMMOTH	SVM	0.2053	0.3309	0.2633

Each entry in the table is the fraction of proteins in the test set that are assigned to the incorrect superfamily by the given method.