Table 2.

AutoSCOP comparison.

Method	Covered	Uncovered	Total
AutoSCOP	7	18	25
SVM	3	62	65
PSI-BLAST	6	24	30
SVM → PSI-BLAST	4	40	44
PSI-BLAST → SVM	3	24	27
Total	38	62	100

Each entry in the table is the number of proteins from a test set of 100 proteins taken from SCOP.1.73 that are assigned to the incorrect superfamily by the given method. Each superfamily is "covered" or "uncovered," depending on whether an SVM has been trained to recognize it.