TABLE 1.
Data collection and refinement statistics
| UDP-4-amino | AcCoA | Citrate | SeMet derivative | |
|---|---|---|---|---|
| Data collection | ||||
| Space group | P4332 | P212121 | P63 | P63 |
| Unit cell dimension, a, b, c (Å) | 162, 162, 162 | 56, 92, 125 | 86, 86, 65 | 86, 86, 65 |
| Resolution (Å) | 30-2.30 | 50-1.80 | 30-1.77 | 30-2.2 |
| Rmerge (%)a,b | 11.0 (60.7) | 6.3 (36.1) | 6.2 (57.1) | 13.6 (61.8) |
| I/σIb | 29.4 (4.5) | 32.0 (5.0) | 27.7 (2.9) | 12.2 (2.6) |
| Completeness (%)b | 100 (100) | 99.9 (99.9) | 99.7 (99.6) | 100 (100) |
| Redundancyb | 30.2 (30.8) | 8.0 (7.5) | 5.7 (5.7) | 5.6 (5.6) |
| Riso (%)b | 12.0 | |||
| Refinement | ||||
| Resolution (Å) | 30-2.30 | 30-1.80 | 30-1.77 | |
| Unique reflections | 31,265 | 56,913 | 25,746 | |
| Rwork/Rfree (%)d,e | 17.8/19.1 | 18.4/22.0 | 18.3/19.9 | |
| No, atoms | 1,687 | 5,006 | 1,616 | |
| Protein | 1,447 | 4,226 | 1,397 | |
| Organic | 38 | 153 | 13 | |
| Water | 202 | 627 | 206 | |
| B-factors (Å2) | ||||
| Overall | 28.6 | 19.6 | 25.9 | |
| Protein | 27.0 | 17.0 | 22.9 | |
| Organic | 23.7 | 25.7 | 21.4 | |
| Water | 41.4 | 36.3 | 46.4 | |
| r.m.s.d. | ||||
| Bond lengths (Å) | 0.013 | 0.010 | 0.010 | |
| Bond angles (°) | 1.383 | 1.620 | 1.189 | |
| Ramachandran plot, %f | 85.1/14.9/0.0 | 86.2/13.6/0.2 | 89.0/11.0/0.0 | |
| PDB code | 3BSS | 3BSY | 3BSW |
c Riso = ∑(|FPH - FP|)/∑|FP|, the mean fractional isomorphous change between the native amplitudes (FP) and the amplitudes from the SeMet derivative data set (FPH).
The number in parentheses represents the highest resolution bin; 2.38-2.30 Å, 1.86-1.80 Å, 1.83-1.77 Å, and 2.28-2.20 Å for the data sets of UDP-4amino, AcCoA, citrate, and the SeMet derivative, respectively.
Rmerge = ∑|I - <I>|/∑I, where I is the intensity of a reflection, and <I> is the mean intensity of a group of equivalent reflections.
Rwork = ∑h||F(h)obs| - |F(h)calc| /∑h|F(h)obs|.
Rfree was calculated for 5% of reflections randomly excluded from the refinement.
Ramachandran plot statistics are given as core/allowed/generously allowed and are for all chains.