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. 2008 Oct 10;283(41):27937–27946. doi: 10.1074/jbc.M801207200

TABLE 1.

Data collection and refinement statistics

UDP-4-amino AcCoA Citrate SeMet derivative
Data collection
Space group P4332 P212121 P63 P63
Unit cell dimension, a, b, c (Å) 162, 162, 162 56, 92, 125 86, 86, 65 86, 86, 65
Resolution (Å) 30-2.30 50-1.80 30-1.77 30-2.2
Rmerge (%)a,b 11.0 (60.7) 6.3 (36.1) 6.2 (57.1) 13.6 (61.8)
IIb 29.4 (4.5) 32.0 (5.0) 27.7 (2.9) 12.2 (2.6)
Completeness (%)b 100 (100) 99.9 (99.9) 99.7 (99.6) 100 (100)
Redundancyb 30.2 (30.8) 8.0 (7.5) 5.7 (5.7) 5.6 (5.6)
Riso (%)b 12.0
Refinement
Resolution (Å) 30-2.30 30-1.80 30-1.77
Unique reflections 31,265 56,913 25,746
Rwork/Rfree (%)d,e 17.8/19.1 18.4/22.0 18.3/19.9
No, atoms 1,687 5,006 1,616
Protein 1,447 4,226 1,397
Organic 38 153 13
Water 202 627 206
B-factors (Å2)
Overall 28.6 19.6 25.9
Protein 27.0 17.0 22.9
Organic 23.7 25.7 21.4
Water 41.4 36.3 46.4
r.m.s.d.
Bond lengths (Å) 0.013 0.010 0.010
Bond angles (°) 1.383 1.620 1.189
Ramachandran plot, %f 85.1/14.9/0.0 86.2/13.6/0.2 89.0/11.0/0.0
PDB code 3BSS 3BSY 3BSW

c Riso = ∑(|FPH - FP|)/∑|FP|, the mean fractional isomorphous change between the native amplitudes (FP) and the amplitudes from the SeMet derivative data set (FPH).

a

The number in parentheses represents the highest resolution bin; 2.38-2.30 Å, 1.86-1.80 Å, 1.83-1.77 Å, and 2.28-2.20 Å for the data sets of UDP-4amino, AcCoA, citrate, and the SeMet derivative, respectively.

b

Rmerge = ∑|I - <I>|/∑I, where I is the intensity of a reflection, and <I> is the mean intensity of a group of equivalent reflections.

d

Rwork = ∑h||F(h)obs| - |F(h)calc| /∑h|F(h)obs|.

e

Rfree was calculated for 5% of reflections randomly excluded from the refinement.

f

Ramachandran plot statistics are given as core/allowed/generously allowed and are for all chains.