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. Author manuscript; available in PMC: 2009 Nov 1.
Published in final edited form as: Biopolymers. 2008 Nov;89(11):1002–1011. doi: 10.1002/bip.21049

Figure 7.

Figure 7

The variants of the rotation method; ghost functions are depicted in magenta. Conformations A and A(ext) are the original structures with an Ar-Bb interaction, B and B(ext) are the reference structures. In the original and the extended version of the rotation method the energy of interaction is calculated as EA-EB and EA(ext)-EB(ext), respectively. EX is the total energy of the appropriate molecular system shown in the figure.