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. Author manuscript; available in PMC: 2009 Nov 1.
Published in final edited form as: Biopolymers. 2008 Nov;89(11):1002–1011. doi: 10.1002/bip.21049

Table 2.

Bb-Bb interaction energies (kJ·mol-1)

FGG
WGG
YGG
conformer Pb0-Pb3 Pb0-Pb2 Pb1-Pb3 Pb0-Pb3 Pb0-Pb2 Pb1-Pb3 Pb0-Pb3 Pb0-Pb2 Pb1-Pb3
0 -4.4 -18.5 -18.6 -3.0 -17.9 -19.7 -3.8 -18.1 -19.2
1 1.1 -20.3 -19.5 -0.8 -1.4 -19.7 -1.0 -21.1 -18.3
2 0.0 -20.6 -19.1 0.0 -20.1 -19.1 -3.1 -18.6 -19.1
3 -1.4 -20.9 -20.0 0.3 -3.7 -19.4 -2.7 -18.9 -19.8
4 -17.9 1.2 -2.2 -0.3 -0.6 -19.6 -5.2 -19.3 -19.2
5 -0.2 -1.5 -19.4 -6.8 -19.3 -19.9 -0.7 -21.1 -20.5
6 -1.5 -19.4 -2.9 -3.6 0.7 -19.3 -18.8§ -18.3§ -2.8
7 -1.8 -19.7 -2.9 -2.3 -19.4 -2.7 1.8 -3.2 -19.6
8 -1.2 -20.0 -3.5 -4.9 -3.1 -19.5 -0.4 -19.9 -16.5
9 1.2 -2.1 -18.3 -1.6 -21.2 -19.5 1.3 -21.2 -20.4
average -2.6 -14.2 -12.6 -2.3 -10.6 -17.9 -3.3 -18.0 -17.5

the peptide bonds are modeled as acetamide (Figure 1b).

interaction energies of H-bonds are shown in bold.

§

a bifurcated H-bond where the C0 carbonyl oxygen is the acceptor atom and the N3 and N4 hydrogens are the donor atoms; a special fragmentation was used (Supplementary material, Figure 2S).