Table 1 SNPs genotyped in the current study.
SNP | rs number | Chromosome position | bp to next SNP | Minor allele (frequency) | Tagging/coding |
---|---|---|---|---|---|
Block 1 | |||||
1 | rs2201144 | 38897130 | 9952 | C (0.093) | Promoter |
2 | rs1491941 | 38907082 | 10793 | C (0.373) | tSNP |
3 | rs10878244 | 38917875 | 183 | A (0.134) | tSNP |
4 | rs10878245 | 38918058 | 309 | T (0.492) | tSNP; L153L |
5 | rs10878247 | 38918367 | 9592 | T (0.321) | tSNP |
6 | rs10878258 | 38927959 | 3938 | G (0.229) | tSNP |
7 | rs1491938 | 38931897 | 4258 | T (0.489) | tSNP |
8 | rs10784451 | 38936155 | 2506 | A (0.183) | tSNP |
9 | rs2046928 | 38938661 | 126 | G (0.059) | tSNP |
10 | rs2723264 | 38938787 | 4705 | T (0.250) | tSNP |
11 | rs4293189 | 38943492 | 312 | A (0.427) | tSNP |
12 | rs10784661 | 38943804 | 163 | G (0.192) | tSNP |
13 | rs7308720 | 38943967 | 3703 | G (0.088) | N551K |
14 | rs4768224 | 38947670 | 3240 | A (0.369) | tSNP |
15 | rs11564207 | 38950910 | 584 | A (0.107) | tSNP |
16 | rs7308193 | 38951494 | 1648 | G (0.347) | tSNP |
17 | rs10878299 | 38953142 | 3519 | G (0.058) | tSNP |
18 | rs7971935 | 38956661 | 407 | A (0.051) | tSNP |
19 | rs4272849 | 38957068 | 1188 | C (0.483) | tSNP |
Block 2 | |||||
20 | rs10878307 | 38958256 | 8952 | G (0.061) | I723V |
21 | rs4318033 | 38967208 | 5097 | G (0.067) | tSNP |
22 | rs7957754 | 38972305 | 2657 | G (0.449) | tSNP |
23 | rs7966550 | 38974962 | 8739 | C (0.150) | tSNP; L953L |
24 | rs10784498 | 38983701 | 5477 | A (0.287) | tSNP |
25 | rs7133914 | 38989178 | 10990 | A (0.092) | R1398H |
26 | rs11564148 | 39000168 | 12027 | A (0.324) | S1647T |
27 | rs10878386 | 39012195 | 3079 | G (0.069) | tSNP |
28 | rs2404834 | 39015274 | 3723 | T (0.096) | tSNP |
29 | rs1427273 | 39018997 | 6763 | C (0.296) | tSNP |
Block 3 | |||||
30 | rs11564147 | 39025760 | 2761 | A (0.069) | tSNP |
31 | rs10878405 | 39028521 | 1832 | A (0.324) | tSNP; E2108E |
32 | rs4768235 | 39030353 | 689 | A (0.127) | tSNP |
33 | rs7303525 | 39031042 | 33 | C (0.196) | tSNP |
34 | rs7132187 | 39031075 | 373 | A (0.298) | tSNP |
35 | rs7307310 | 39031448 | 3214 | T (0.092) | tSNP |
36 | rs890575 | 39034662 | – | G (0.117) | tSNP |
The five non‐synonymous and promoter SNPs that were not part of the tagging set are indicated. Minor allele frequency and chromosome position are based on the NCBI reference sequence in dbSNP build 124.