Table 1. The percentage and number of insertions in various regions of HCV.
Region | Genome Location | Size (nucleotides) | Total Insertions in a Region | Tolerated | Attenuated | Lethal |
5′NTR | 55–340 | 286 | 93 (3.9%) | 37 (39.8%) | 8 (8.6%) | 48 (51.6%) |
Core | 341–913 | 573 | 81 (3.4%) | 24 (29.6%) | 8 (9.9%) | 49 (60.6%) |
E1 | 914–1489 | 576 | 109 (4.5%) | 6 (5.5%) | 0 (0.0%) | 103 (94.5%) |
E2 | 1490–2590 | 1101 | 272 (11.3%) | 24 (8.8%) | 8 (3.0%) | 240 (88.2%) |
p7 | 2591–2779 | 189 | 64 (2.7%) | 18 (28.1%) | 2 (3.1%) | 44 (68.8%) |
NS2 | 2780–3430 | 651 | 199 (8.3%) | 15 (7.5%) | 3 (1.5%) | 181 (91.0%) |
NS3 | 3431–5323 | 1893 | 467 (19.5%) | 39 (8.4%) | 5 (1.0%) | 423 (90.6%) |
NS4A | 5324–5485 | 162 | 26 (1.0%) | 3 (11.5%) | 1 (3.9%) | 22 (84.6%) |
NS4B | 5486–6268 | 783 | 177 (7.4%) | 23 (13.0%) | 0 (0.0%) | 154 (87.0%) |
5A Region 1 | 6269–7016 | 748 | 170 (7.1%) | 21 (12.4%) | 8 (4.7%) | 141 (82.9%) |
5A Region 2 | 7017–7318 | 302 | 82 (3.4%) | 12 (14.6%) | 18 (21.0%) | 52 (63.4%) |
5A Region 3 | 7319–7666 | 348 | 106 (4.4%) | 48 (45.3%) | 16 (15.1%) | 42 (39.6%) |
NS5B | 7667–9442 | 1776 | 467 (19.5%) | 92 (19.7%) | 22 (4.7%) | 353 (75.6%) |
3′NTR | 9443–9571 | 129 | 86 (3.6%) | 12 (13.95%) | 12 (13.95%) | 62 (72.1%) |
Total | 55–9571 | 9517 | 2399 (100.0%) | 374 (15.6%) | 111 (4.6%) | 1914 (79.8%) |