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. 2008 Aug 1;74(19):5948–5957. doi: 10.1128/AEM.00952-08

TABLE 3.

Phylogenetic information for bacterial populations identified by sequencing DNA from DGGE bands, including closest database matches and closest cultivated relatives based on MEGABLAST analysisa

Band Plant Source Closest BLAST match
Closest cultivated relative
Phylum or subphylum Accession no. % Identity Taxon Accession no. % Identity
SAV01Z01 Z. marina Leaf Bacteroidetes AY828430 99 Marine bacterium SCRIPPS_413 AF359548 98
SAV01Z02 Z. marina Leaf Bacteroidetes AF235111 96 Cytophaga sp. strain RP8 EU375128 96
SAV01Z03 Z. marina Leaf Bacteroidetes AY678493 92 Lewinella agarilytica AM286229 92
SAV01Z04 Z. marina Leaf Gammaproteobacteria AF448465 97 Methylotenera mobila DQ287786 96
SAV01Z05 Z. marina Leaf Plastid EF036309 100 Chloroplast of Yucca schidigera EU016691 100
SAV01Z06 Z. marina Leaf Alphaproteobacteria DQ659412 100 Rhodobacteraceae sp. strain BS110 DQ659412 100
SAV01Z07 Z. marina Leaf Alphaproteobacteria DQ436521 100 Thalassobacter sp. strain GA2-M15 EU342372 100
SAV01Z08 Z. marina Leaf Alphaproteobacteria DQ103624 100 Roseobacter sp. strain CSQ-2 EF512125 99
SAV02Z02 Z. marina Root Epsilonproteobacteria EF028999 100 Arcobacter nitrofigilis EU106662 100
SAV02Z03 Z. marina Root Gammaproteobacteria DQ234105 96 Dibenzofuran-degrading bacterium DBF-MAK AB086228 93
SAV02Z04 Z. marina Root Gammaproteobacteria AY711846 100 Gammaproteobacterium SP5 AM884361 95
SAV02Z05 Z. marina Root Gammaproteobacteria DQ462284 97 Oceanospirillaceae bacterium JAMM 1548 AB330882 96
SAV02Z06 Z. marina Root Gammaproteobacteria EF028933 100 Gammaproteobacterium M41 AM156910 96
SAV03Z01 P. perfoliatus Leaf Plastid, diatom DQ906722 96 Chloroplast of Phaeodactylum tricornutum EF067920 96
SAV03Z02 P. perfoliatus Leaf Betaproteobacteria AY678527 94 Bacterium HTCC4045 EF628482 93
SAV03Z03 P. perfoliatus Leaf Alphaproteobacteria AM157616 99 Porphyrobacter tepidarius AY568467 99
SAV03Z04 P. perfoliatus Leaf Betaproteobacteria DQ064982 99 Betaproteobacterium IMCC1762 DQ664233 96
SAV03Z05 P. perfoliatus Leaf Plastid EF036309 100 Chloroplast of Yucca schidigera EU016691 100
SAV03Z06 P. perfoliatus Leaf Alphaproteobacteria AB220125 100 Sphingomonadaceae bacterium PB208 AB220125 100
SAV03Z07 P. perfoliatus Leaf Alphaproteobacteria EF029025 100 Rhodobacteraceae sp. strain DG1295 DQ486507 100
SAV03Z08 P. perfoliatus Leaf Bacteroidetes DQ229334 90 Lewinella persicus EU371935 84
SAV04Z01 P. perfoliatus Root Gammaproteobacteria AF165907 97 Endosymbiont of Lamellibrachia satsuma AB073120 97
SAV04Z02 P. perfoliatus Root Gammaproteobacteria AY129090 97 Endosymbiont of Lamellibrachia barhami AY129113 97
SAV04Z03 P. perfoliatus Root Bacteroidetes AF141549 98 Symbiont b-Z43 of Tuber borchii AF233292 90
SAV04Z04 P. perfoliatus Root Betaproteobacteria AB240458 97 Azoarcus sp. strain CC-11 AB033745 96
SAV04Z05 P. perfoliatus Root Betaproteobacteria AB264575 94 Azoarcus anaerobius Y14701 93
SAV04Z06 P. perfoliatus Root Plastid EF036309 100 Chloroplast of Yucca schidigera EU016691 100
SAV04Z07 P. perfoliatus Root Betaproteobacteria DQ988325 100 Hydrogenophaga sp. strain BAC306 EU130968 100
SAV04Z08 P. perfoliatus Root Betaproteobacteria AB179685 99 Methyloversatilis universalis DQ923115 93
SAV05Z01 S. pectinata Leaf Bacteroidetes DQ154800 90 Cytophaga sp. strain RP8 EU375128 86
SAV05Z02 S. pectinata Leaf Bacteroidetes AY171331 93 Cytophaga sp. strain I-545 AB073573 86
SAV05Z03 S. pectinata Leaf Cyanobacteria DQ269094 97 Aphanocapsa sp. strain 0MI27S1 DQ264196 96
SAV05Z05 S. pectinata Leaf Cyanobacteria DQ072927 98 Phormidium sp. strain LMECYA 214 EU078511 96
SAV05Z06 S. pectinata Leaf Betaproteobacteria DQ064982 99 Betaproteobacterium IMCC1762 DQ664233 96
SAV05Z07 S. pectinata Leaf Bacteroidetes AY711389 92 Bacteroidetes sp. strain K3 AM749788 88
SAV05Z08 S. pectinata Leaf Alphaproteobacteria AJ298351 99 Rhodobacteraceae sp. strain DG1295 DQ486507 99
SAV06Z01 S. pectinata Root Spirochaeta DQ521098 94 Spirochaeta isovalerica M88720 94
SAV06Z02 S. pectinata Root Bacteroidetes DQ456238 96 Bacteroides uniformis EU136680 94
SAV06Z03 S. pectinata Root Gammaproteobacteria AF165907 96 Endosymbiont of Lamellibrachia satsuma AB073120 96
SAV06Z04 S. pectinata Root Bacteroidetes EF028993 94 Marinilabilia salmonicolor M62422 94
SAV06Z06 S. pectinata Root Deltaproteobacteria AM418397 91 Desulfovibrio pangongensis AM418397 91
SAV06Z07 S. pectinata Root Betaproteobacteria AB265944 99 Methyloversatilis universalis DQ923115 92
SAV06Z08 S. pectinata Root Betaproteobacteria AB265944 99 Methyloversatilis universalis DQ923115 92
SAV07Z01 V. americana Leaf Betaproteobacteria AJ318162 96 Bacterium HTCC4045 EF628482 93
SAV07Z02 V. americana Leaf Betaproteobacteria DQ315717 98 Leptothrix ginsengisoli AB271046 89
SAV07Z03 V. americana Leaf Plastid, diatom DQ906722 98 Chloroplast of Phaeodactylum tricornutum EF067920 97
SAV07Z04 V. americana Leaf Betaproteobacteria AF448465 99 Methylotenera mobila DQ287786 98
SAV07Z05 V. americana Leaf Alphaproteobacteria EF016501 100 Novosphingobium pentaromativorans EU167958 100
SAV07Z06 V. americana Leaf Bacteroidetes EF686991 93 Salegentibacter sp. strain BH206 EF520007 91
SAV07Z07 V. americana Leaf Plastid EF036277 96 Chloroplast of Croomia pauciflora DQ629458 96
SAV07Z08 V. americana Leaf Betaproteobacteria AY144233 96 Leptothrix mobilis X97071 96
SAV08Z01 V. americana Root Bacteroidetes AM159414 95 Bacterium HTCC4101 EF628490 87
SAV08Z03 V. americana Root Betaproteobacteria EF107794 97 Methylophilus sp. strain u33 EU375653 95
SAV08Z04 V. americana Root Betaproteobacteria EF107794 97 Methylophilus sp. strain u33 EU375653 95
SAV08Z05 V. americana Root Alphaproteobacteria EF016501 100 Novosphingobium pentaromativorans EU167958 100
SAV08Z06 V. americana Root Plastid, diatom AY711816 100 Chloroplast of Asterionella glacialis AJ319828 99
SAV08Z07 V. americana Root Plastid EF036277 96 Chloroplast of Croomia pauciflora DQ629458 96
SAV08Z08 V. americana Root Alphaproteobacteria EF027003 100 Agrobacterium tumefaciens strain CCBAU EU256457 100