TABLE 2.
Sequences of oligonucleotides used in this study
| Primer | Sequence (5′-3′) |
|---|---|
| vps-II_del_A | CATGCCATGGCATGCGGCTGGTCTATGTGGCTTG |
| vps-II_del_B | CGAGCATAGTCCCTAGCAAGGCAACCGAAA |
| vps-II_del_C | GTCTTGCTAGGGACTATGCTCGCGGGTTTACTGC |
| vps-II_del_D | CGAGCTCGCTCGATCTTTGCCGATCACC |
| cyaA_del_A | GATCCCATGGGTTTTCCCGCTTGATTGTGT |
| cyaA_del_B | CGCGGTTGGCCTGCTGGATAGGATTGGCTTC |
| cyaA_del_C | TATCCAGCAGGCCAACCGCGTTGAAGTCTAT |
| cyaA_del_D | GATCTCTAGACAAATCGATTGATGGCGAAT |
| crp_del_A | GATCTCTAGATGAGTTTTGCGATGGATTTG |
| crp_del_B | TGATCTTGATCGCAACTGAACCTTTTACG |
| crp_del_C | TTCAGTTGCGATCAAGATCACTCGCCAAGAG |
| crp_del_D | GATCGAGCTCCCAACATGGCTTTAGCATCA |
| cdgI_del_A | CTAGCCATGGCCTCTTCGTGTCCCGGAGTATC |
| cdgI_del_B | CAACGGGTAAGGCCAAAGAATGAATCTTGC |
| cdgI_del_C | TTCTTTGGCCTTACCCGTTGCGACAAACAGT |
| cdgI_del_D | CTAGTCTAGACTCATCAAGGAATCGCATCA |
| VC0072_del_A | GATCTCTAGACTAGGCTAATCGAACGCTCATTCC |
| VC0072_del_B | GCTGCAAAGCTAACGGTTGGCTCGATAAGG |
| VC0072_del_C | CCAACCGTTAGCTTTGCAGCAGATTGGTGTG |
| VC0072_del_D | GGAGCTCGAGACTGATGCGCTCACTGAC |
| VC1376_del_A | CGAGCTCCAGCCCAGCATGGAGCATATC |
| VC1376_del_B | ACCTTTCGATACCAGCAAGGGCACAATCAC |
| VC1376_del_C | CCTTGCTGGTATCGAAAGGTCGAAATCGTGT |
| VC1376_del_D | CATGCCATGGCATGCATTCACCAGCCAACAGACG |
| VC2750_del_A | CATGCCATGGCAGCCAAAGAGCTCGGAG |
| VC2750_del_B | GCAACCGACAAACGGCAGTATGATGGC |
| VC2750_del_C | TTTGTCGGTTGCCCACGCGGGCAAGGC |
| VC2750_del_D | CGATTCTAGAGTACCAAAGGTGCGGCTC |
| VCA0217_del_A | GATCTCTAGACTAGTGCGCCATGTAACCAATAGA |
| VCA0217_del_B | GCTTTTACCGATGCGCTATTGGGTTCAACT |
| VCA0217_del_C | AATAGCGCATCGGTAAAAGCAGGAGAGTGA |
| VCA0217_del_D | GGAGCTCGGTCTTATTGATGCGGGAGCA |
| rbmC_pro F | GATCGAATTCCTAGAAAATGCTTCTTGA |
| rbmC_pro R | GATCGGATCCTTGTAAGACTCCCTTTACCT |
| bap1_pro F | GAGAGAATTCCGCCGCGTTGCTGAG |
| bap1_pro R | GAGAGGATCCGGCTTGACCTTCATCT |
| RecA578 | GTGCTGTGGATGTCATCGTTGTTG |
| RecA863 | CCACCACTTCTTCGCCTTCTTTGA |
| cdgA_rt F | CAAGCGATCTGGTTCTTATTCC |
| cdgA_rt R | AAAACGGCTCCAAGTCAGC |
| cdgI_rt F | GATGTGGAAAGGCAAAGAGC |
| cdgI_rt R | CTGTGCTATGCGAGTTTTGC |
| rocS_rt F | CAGGTTGCACCTCTTTACTCG |
| rocS_rt R | ACCCGTGTCGGTTATACAGC |