TABLE 3.
Predicted PpsR binding sites for ppaA and degenerate PpsR binding sites detected for the new members of the ppsR regulon
| Gene | Gene product | PpsR TGTCN10GACA sequencea | Distance from ATG (bp) |
|---|---|---|---|
| RSP0154 | 3-Hydroxyisobutyrate dehydrogenase | None | |
| RSP0283 | PpaA | TGTCAATTCTGACTTACA | −296 |
| TTTTGCGGCGAGAGCACA | −276 | ||
| TGTCAATTTTCTTTGACA | −152 | ||
| RSP0696 | CcoN | TGCTCCACATCTTCAACA | 691 |
| AGTGGTGGTACGGCCACA | 784 | ||
| RSP0695 | CcoO | TGTGGGTCTCGGGCATCA | −249 |
| TGAACGCCTTCGCCGACA | −186 | ||
| TGTGGAAAACCGTGACCA | −81 | ||
| AGTGAAGATAAGGGGACA | −21 | ||
| TGTTCTACCTCGAGAACA | 106 | ||
| RSP2122 | Putative dimethylamine corrinoid protein | TGTCGCAAACCGATGATG | −75 |
| TGTCCGAACTCGATGACG | 25 | ||
| RSP3241 | Partial transcriptional regulatory protein with | CGCGGGCCTTGGGGGACA | −181 |
| C-terminal homology to OmpR | GGGCCTTGGGGGACAACA | −178 | |
| CGTCGATGGAGAATGACA | −17 |
a
Underlining indicates residues that are less conserved.