TABLE 1.
Characteristics of isolates sequenced
| Pathovar | Strain | Serotype | Virulence factorsa | Genome status | No. of contigs | Plasmid | GenBank accession no. | Reference(s) |
|---|---|---|---|---|---|---|---|---|
| Laboratory adapted | K-12 | Complete | 1 | No | U00096.2 | 1 | ||
| Laboratory adapted | W3110 | Complete | 1 | No | AP009048 | 19, 53 | ||
| Commensal | HS | O9 | Complete | 1 | No | CP000802 | This study | |
| ETEC | E24377A | O139:H28 | LT+ ST+; CFA CS1 and CS3 | Complete | 1 | Yes | CP000800 | This study |
| ETEC | B7A | O148:H28 | LT+ ST+; CFA CS6 | Draft | 198 | Yesb | AAJT00000000 | This study |
| EHEC | EDL933 | O157:H7 | LEE, Shiga toxin | Complete | 1 | Yesc | AE005174.2 | 46 |
| EHEC | Sakai | O157:H7 | LEE, Shiga toxin | Complete | 1 | Yesc | BA000007.2 | 20 |
| ExPEC/UPEC | CFT073 | O6:K2:H1 | MRHA/S, MRHA/H, hemolysin, aerobactin, pap pili (X2) | Complete | 1 | No | AE014075.1 | 67 |
| ExPEC/UPEC | F11 | O6:H31 | MRHA/S, MRHA/H, hemolysin, aerobactin, pap pili, and PapG III allele | Draft | 88 | No | AAJU00000000 | This study |
| ExPEC/UPEC | UTI89 | Cysitis isolation; pap pili, PapG III allele, iron-regulated genes | Complete | 1 | Yesc | CP000243.1 | 6 | |
| ExPEC/UPEC | 536 | O6:K15:H31 | MRHA; hemolysin, aerobactin, pap pili | Complete | 1 | No | CP000247.1 | 22 |
| EPEC | E22 | O103:H2 | Rabbit pathogen, EAF plasmid, LEE | Draft | 109 | Unknown | AAJV00000000 | This study |
| EPEC | E110019 | O111:H9 | Atypical EPEC, LEE, EAF plasmid not present | Draft | 115 | Unknown | AAJW00000000 | This study |
| EPEC | B171 | O111:NM | EAF plasmid, LEE | Draft | 159 | Unknownb | AAJX00000000 | This study |
| EAEC | Ec042 | O44:H18 | enterotoxin (Pet and EAST), pAAF plasmid | Incomplete | 7 | Yes | NAd | Sanger |
| EAEC | 101-1 | untypable:H10 | Heat-stable enterotoxin production, lacks pAAF plasmid | Draft | 70 | Yesb | AAMK00000000 | This study |
| ExPEC/avian | APEC01 | O1 | Avian disease-causing isolate, pAPEC01 | Complete | 1 | Yes | CP000468.1 | 27 |
LT, labile toxin; ST, stable toxin; MRHA, mannose-resistant hemagglutinin.
The draft sequences contain contigs that appear to be plasmid in origin; however, no plasmids have been closed for the projects.
Strain EDL933 was sequenced with a plasmid designated pO157 (accession number AF074613) that is 92.1 kb long; there is no smaller plasmid in this isolate. Strain Sakai was sequenced with two plasmids, pO157 (accession number AB011549) and pOSAK1 (accession number AB011548), which were 92.7 and 3.3 kb long, respectively. Strain UTI89 contains a 114-kb plasmid (accession number CP000244), and strain B171 contains a 68.8-kb plasmid that has been sequenced, pB171 (EAF plasmid; accession number AB024946).
NA, not applicable.