Table 2.
TMHMM database | |||||||||
Sn | Sp | CC | AC | Sov3obs | 100% | ≥ 90% | ≥ 75% | ||
igTM | exp5 | 0.808 | 0.810 | 0.707 | 0.702 | 0.680 | 0.474 | 0.603 | 0.756 |
exp6 | 0.819 | 0.796 | 0.715 | 0.707 | 0.707 | 0.490 | 0.618 | 0.789 | |
TMHMM 2.0 | 0.900 | 0.879 | 0.830 | 0.827 | 0.915 | 0.339 | 0.636 | 0.920 | |
Pred-TMR | 0.786 | 0.898 | 0.769 | 0.767 | 0.843 | 0.200 | 0.378 | 0.723 | |
Prodiv-TMHMM | 0.832 | 0.854 | 0.778 | 0.768 | 0.866 | 0.269 | 0.523 | 0.848 | |
HMMTOP | 0.849 | 0.894 | 0.810 | 0.802 | 0.913 | 0.255 | 0.537 | 0.844 | |
PHOBIUS | 0.891 | 0.850 | 0.804 | 0.924 | 0.936 | 0.367 | 0.635 | 0.902 | |
MEMSAT3 | 0.896 | 0.843 | 0.799 | 0.912 | 0.801 | 0.412 | 0.750 | 0.926 | |
TMpred | 0.834 | 0.796 | 0.741 | 0.738 | 0.899 | 0.331 | 0.540 | 0.813 |
Experimental results and comparison with results of other methods, with the TMHMM α-helix database. As discussed in the Performance Measures section, 100%, ≤ 90% and ≥ 75% stand for segments correctly detected in that percentage.