Table 3.
TMPDB | |||||||||
Sn | Sp | CC | AC | Sov3obs | 100% | ≥ 90% | ≥ 75% | ||
igTM | exp5 | 0.683 | 0.750 | 0.587 | 0.539 | 0.519 | 0.444 | 0.515 | 0.608 |
exp6 | 0.710 | 0.759 | 0.617 | 0.557 | 0.533 | 0.487 | 0.562 | 0.652 | |
TMHMM 2.0 | 0.739 | 0.831 | 0.717 | 0.659 | 0.745 | 0.259 | 0.465 | 0.671 | |
Pred-TMR | 0.777 | 0.899 | 0.785 | 0.756 | 0.831 | 0.209 | 0.426 | 0.736 | |
Prodiv-TMHMM | 0.737 | 0.829 | 0.709 | 0.659 | 0.756 | 0.208 | 0.427 | 0.647 | |
HMMTOP | 0.769 | 0.802 | 0.686 | 0.861 | 0.670 | 0.189 | 0.381 | 0.651 | |
PHOBIUS | 0.775 | 0.786 | 0.686 | 0.670 | 0.811 | 0.258 | 0.452 | 0.693 | |
MEMSAT 3 | 0.775 | 0.793 | 0.668 | 0.671 | 0.783 | 0.278 | 0.487 | 0.692 | |
TMpred | 0.702 | 0.755 | 0.615 | 0.598 | 0.746 | 0.222 | 0.361 | 0.572 |
Experimental results and comparison with results of other methods, with the TMPDB α-helix database. As discussed in the Performance Measures section, 100%, ≥ 90% and ≥ 75% stand for segments correctly detected in that percentage.