Table 4.
TMPDB-α-nR | |||||||||
Sn | Sp | CC | AC | Sov3obs | 100% | ≥ 90% | ≥ 75% | ||
igTM | exp5 | 0.637 | 0.757 | 0.571 | 0.533 | 0.488 | 0.431 | 0.516 | 0.623 |
exp6 | 0.698 | 0.771 | 0.618 | 0.578 | 0.511 | 0.487 | 0.575 | 0.674 | |
TMHMM 2.0 | 0.814 | 0.813 | 0.728 | 0.710 | 0.818 | 0.335 | 0.569 | 0.805 | |
Pred-TMR | 0.775 | 0.826 | 0.696 | 0.700 | 0.823 | 0.183 | 0.376 | 0.688 | |
Prodiv-TMHMM | 0.823 | 0.802 | 0.720 | 0.712 | 0.841 | 0.272 | 0.543 | 0.802 | |
HMMTOP | 0.823 | 0.782 | 0.699 | 0.699 | 0.875 | 0.257 | 0.486 | 0.777 | |
PHOBIUS | 0.845 | 0.791 | 0.717 | 0.860 | 0.881 | 0.333 | 0.559 | 0.847 | |
MEMSAT 3 | 0.820 | 0.808 | 0.711 | 0.714 | 0.828 | 0.328 | 0.582 | 0.808 | |
TMpred | 0.765 | 0.747 | 0.643 | 0.643 | 0.813 | 0.264 | 0.441 | 0.673 |
Experimental results and comparison with results of other methods, with the TMPDB-α-nR α-helix database. As discussed in the Performance Measures section, 100%, ≤ 90% and ≥ 75% stand for segments correctly detected in that percentage.