Table 2. Codivergence events of DdDp (core) and “core-less” genomes (satellite) assemblages for four DNA viral families.

Tanglegrams§	Codivergence Events (Cd)	p¶	Duplication events	Exchange events	Sorting events	Total non-codivergent Events (nCd)	Cd/nCd
Adenovirus
Core & Satellite							0.147
ML & Median	9	0.0457	10	0	54	64
ML & Mean	10	0.0105	9	0	59	68
Pars & Median	10	0.0112	8	1	49	58
Pars & Mean	9	0.0478	10	0	58	68
Total events	38					258
Baculovirus
Core & Satellite							0.374
ML & Median	18	<0.0012	6	1	22	29
ML & Mean	17	<0.0008	7	1	41	49
Pars & Median	14	0.0011	11	0	49	60
Pars & Mean	16	<0.0001	8	1	27	36
Total events	65					174
Herpesvirus
Core & Satellite							0.608
ML & Median	22	<0.0001	7	1	30	38
ML & Mean	23	<0.0001	6	1	29	36
Pars & Median	22	<0.0007	7	1	29	37
Pars & Mean	23	<0.0008	6	1	30	37
Total events	90					148
Poxvirus
Core & Satellite							1.030
ML & Median	17	<0.0001	3	1	12	16
ML & Mean	17	<0.0001	3	1	12	16
Pars & Median	17	<0.0001	3	1	13	17
Pars & Mean	17	<0.0001	3	1	13	17
Total events	68					66

^¶The reconstructions of codivergence events were obtained by minimizing the numbers of duplication, exchange and sorting events, inferred with the TreeMap program v 1.0, and evaluated against 10 thousand random assemblages to obtain a number of codivergent events expected by chance, which was expressed as probability of the observed the number codivergent events shown in the p column.

^§Assemblages (tanglegrams) for each virus family included trees for the core (DdDp) reconstructed with maximum likelihood (ML) and parsimony (MP) and phenomes for satellite functions (core-less genomes) using the Median and Mean distances. Cd/nCd (last column) shows the ratio of codivergence (Cd) to the sum of non-codivergence (nCd) events for each viral family.