TABLE 3.

List of significant marker–trait pairs after correction for multiple testing

Trait	Gene	Marker	Nb	R2	2a/σPc	d/a	2a	d	P	FDR Q-valued
FERL	zagl1	zagl1.1	487	0.020	0.176	−2.56	1.90	−2.43	0.0054	0.0783
FERL	ra1	PZD00073.5	474	0.019	0.833	−1.01	9.03	−4.56	0.0062	0.0783
FERL	ra1	PZD00073.8	457	0.018	0.932	−0.95	10.2	−4.80	0.0068	0.0783
FERL	te1	PZD00006.1	465	0.019	0.300	−0.11	3.25	−0.17	0.0119	0.0984
FERL	zap1	PZD00022.3	455	0.019	0.435	0.87	4.71	2.06	0.0151	0.0984
FERL	te1	te1.3	489	0.015	0.421	1.01	4.54	2.29	0.0171	0.0984
LBIN	zfl1	PZB00055.1	748	0.015	0.156	−3.34	0.13	−0.22	0.0021	0.0313
LFNM	zagl1	PZD00020.3	699	0.012	0.476	−0.26	1.32	−0.17	0.0084	0.0773
LFNM	zagl1	PZD00020.4	731	0.011	0.423	0.22	1.18	0.13	0.0151	0.0773
LFNM	elm1	PZB00160.4	693	0.011	0.642	0.10	1.78	0.09	0.0178	0.0773
LFNM	ZmCIR1	PZB00232.5	749	0.009	0.301	−0.69	0.84	−0.29	0.0185	0.0773
LFNM	zagl1	zagl1.1	745	0.010	0.332	−0.28	0.93	−0.13	0.0200	0.0773
LFNM	ZmGI	PZB00049.2	752	0.010	0.394	0.65	1.10	0.36	0.0232	0.0773
LIBN	tb1	tb1.18	532	0.030	ND	0.31	3.42	0.53	0.0001	0.0055e
LIBN	tb1	tb1.19	497	0.031	ND	0.10	3.79	0.20	0.0003	0.0082e
LIBN	ids1	PZD00069.4	530	0.029	ND	0.40	5.19	1.04	0.0005	0.0091e
NMFC	te1	PZD00008.3	461	0.028	0.809	0.59	1.63	0.48	0.0012	0.0240
NMFC	te1	te1.3	489	0.022	0.583	1.21	1.17	0.71	0.0044	0.0260
OLCT	su1	su1.5	673	0.022	0.077	1.01	0.30	0.15	0.0008	0.0219e
OLCT	su1	su1.9	708	0.016	0.613	0.18	0.38	0.03	0.0038	0.0383
OLCT	su1	su1.12	699	0.015	0.537	0.20	0.34	0.03	0.0054	0.0383
OLCT	su1	su1.7	700	0.015	0.614	0.17	0.38	0.03	0.0056	0.0383
NDFC	zagl1	PZD00020.3	567	0.021	ND	−1.15	5.60	−3.21	0.0019	0.0310
NDFC	zagl1	PZD00021.2	606	0.019	ND	−0.97	2.72	−1.36	0.0031	0.0310
TBN	ZmGI	PZB00049.7	366	0.030	0.382	−0.86	10.6	−4.58	0.0016	0.0483
TBN	ba1	PZD00078.2	377	0.026	0.501	−0.17	13.7	−1.14	0.0026	0.0483
TBN	tb1	tb1.18	386	0.023	0.430	0.87	12.0	5.24	0.0047	0.0582
TBN	ZmGI	PZB00049.2	383	0.029	0.432	−0.47	12.1	−2.82	0.0070	0.0650
TBN	zagl1	PZD00019.1	363	0.021	0.683	−0.61	19.3	−5.87	0.0109	0.0712
TBN	td1	PZB01115.5	355	0.023	0.211	2.73	6.00	8.20	0.0115	0.0712
TILL	zfl2	zfl2.6	776	0.014	0.826	−1.34	4.41	−2.96	0.0007	0.0313e
YKFCa	ra2	Ra2_ORF.4	613	0.047	ND	−0.91	0.69	−0.31	7.88 × 10−7	4.40 × 10−5e
YKFCa	ra2	Ra2_promoter.3	587	0.028	ND	−1.11	0.48	−0.26	0.0002	0.000558e

^aAll values reported for this trait were calculated with trait values that have been transformed using a square-root transformation.

^bNumber of individuals with both trait and marker data.

^cFor traits with nonnormal distributions the 2a/σ_P statistic is misleading; therefore these traits are listed as having no data (ND).

^dOnly marker–trait associations with FDR Q-values ≤0.10 are shown.

^eAssociation withstands the Bonferroni correction.