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. 2008 Oct;180(2):977–993. doi: 10.1534/genetics.108.092221

TABLE 3.

AFLP simulation results

True: Balancing selection
Neutral
Directional selection
Classified: Bal. Neut. Direc. Bal. Neut. Direc. Bal. Neut. Direc.
Pop-2 0 (0) 100 (100) 0 (0) 0 (0) 794 (788) 6 (12) 0 (0) 70 (59) 30 (41)
Pop-6a 37 (60) 63 (40) 0 (0) 20 (61) 758 (702) 22 (37) 0 (0) 29 (28) 71 (72)
Pop-10 72 (81) 28 (19) 0 (0) 21 (45) 755 (721) 24 (34) 0 (0) 21 (19) 79 (81)
Pop-20 95 (97) 5 (3) 0 (0) 26 (50) 749 (709) 25 (41) 0 (0) 14 (10) 86 (90)
Fst-0.05 1 (14) 99 (86) 0 (0) 0 (19) 784 (752) 16 (29) 0 (0) 33 (22) 67 (78)
Fst-0.10 27 (49) 73 (51) 0 (0) 17 (46) 761 (712) 22 (42) 0 (0) 26 (22) 74 (78)
Fst-0.15a 37 (60) 63 (40) 0 (0) 20 (61) 758 (702) 22 (37) 0 (0) 29 (28) 71 (72)
Fst-0.25 51 (67) 49 (33) 0 (0) 23 (47) 763 (724) 14 (29) 0 (0) 30 (29) 70 (71)
Size-15 15 (35) 85 (65) 0 (0) 8 (33) 776 (736) 16 (31) 0 (1) 38 (32) 62 (67)
Size-30a 37 (60) 63 (40) 0 (0) 20 (61) 758 (702) 22 (37) 0 (0) 29 (28) 71 (72)
Size-50 47 (65) 53 (35) 0 (0) 38 (65) 734 (684) 28 (51) 0 (0) 21 (17) 79 (83)
Size-100 61 (73) 39 (27) 0 (0) 40 (66) 732 (688) 28 (46) 0 (0) 19 (18) 81 (82)
Fis-0 39 (59) 61 (41) 0 (0) 23 (50) 760 (722) 17 (28) 0 (0) 29 (24) 71 (76)
Fis-0.5a 37 (60) 63 (40) 0 (0) 20 (61) 758 (702) 22 (37) 0 (0) 29 (28) 71 (72)
Fis-1 37 (57) 63 (43) 0 (0) 25 (60) 755 (703) 20 (37) 0 (0) 25 (21) 75 (79)

Numbers of AFLP loci simulated under (“true”) balancing selection, neutrality, and directional selection that were classified in each category using a reversible-jump cutoff of 0.79 (0.69) that give false-positive rates of 5% (10%) are shown. Bal., balancing selection; Neut., neutrality; Direc., directional selection.

a

These data sets represent the same reference data set that is replicated in the table to make comparisons between results.